View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0934_low_7 (Length: 582)
Name: NF0934_low_7
Description: NF0934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0934_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 133; Significance: 7e-69; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 30 - 254
Target Start/End: Original strand, 7500970 - 7501196
Alignment:
| Q |
30 |
gaacaagctattgttttcaagctatgattcaggaaattagctttgatattgattagtgttttcagtttaatatctcctttatagttaatttatttacgta |
129 |
Q |
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| T |
7500970 |
gaacaagctattgttttcaagctatgattcaggaaattagctttgatattgattagtgttttcagtttaatatctcctttatagttaatttatttacgta |
7501069 |
T |
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| Q |
130 |
ttctagctattctcannnnnnnattagc--tnnnnnnnnnctaatctcggtttattgccttcttcattctttttgannnnnnnnnaaataataaatttag |
227 |
Q |
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| T |
7501070 |
ttctagctattctcatttttttattagcaaaaaaaaaaaactaatctcggtttattgccttcttcattctttttgatttttttttaaataataaatttag |
7501169 |
T |
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| Q |
228 |
gatacattatagaaagaacacttagga |
254 |
Q |
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| T |
7501170 |
gacacattatagaaagaacacttagga |
7501196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 274 - 403
Target Start/End: Original strand, 7509053 - 7509182
Alignment:
| Q |
274 |
ttccttttcctattcttcttcctttgcaatttactgatgtggaatttgtcaaactcttgctttggtaaatcaaatttcttcctctccccattttgaattg |
373 |
Q |
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| T |
7509053 |
ttccttttcctattcttcttcctttgcaaattactgatttggaatttgtcaacctcttgctttggtaaatcaaatttcttcctctccccattttgaattg |
7509152 |
T |
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| Q |
374 |
cattaaggagaatggtggcaccttgcttca |
403 |
Q |
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| T |
7509153 |
cattaaggagaatggtggcaccttgcttca |
7509182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 337 - 403
Target Start/End: Complemental strand, 27241558 - 27241492
Alignment:
| Q |
337 |
ggtaaatcaaatttcttcctctccccattttgaattgcattaaggagaatggtggcaccttgcttca |
403 |
Q |
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| T |
27241558 |
ggtaaatcaaatttcttcctctcaccattttgaattgcattaagaagaatggtgacacattgattca |
27241492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 317 - 390
Target Start/End: Complemental strand, 27249183 - 27249111
Alignment:
| Q |
317 |
atttgtcaaactcttgctttggtaaatcaaatttcttcctctccccattttgaattgcattaaggagaatggtg |
390 |
Q |
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||||| ||||||||| ||| ||| |||| |||||||||||||| |||||||||||||||||||| ||||||||| |
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| T |
27249183 |
atttgacaaactctt-cttgggttaatcgaatttcttcctctcgccattttgaattgcattaagaagaatggtg |
27249111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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