View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0934_low_8 (Length: 515)

Name: NF0934_low_8
Description: NF0934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0934_low_8
NF0934_low_8
[»] chr3 (1 HSPs)
chr3 (13-419)||(9681921-9682327)


Alignment Details
Target: chr3 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 13 - 419
Target Start/End: Original strand, 9681921 - 9682327
Alignment:
Q  13 aatatttgtccctcattaccaatttcccatccaagtccactgtacaaaacataattcaacaaatcctccatagcatcccaatctctaacataacctctta 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9681921 aatatttgtccctcattaccaatttcccatccaagtccactgtacaaaacataattcaacaaatcctccatagcatcccaatctctaacataacctctta 9682020  T
Q  113 ccaccggctcaaccgcgacatcatccaccaccaactgaccattaccattatcatttgtttcatcaaccattcgtttcatctgactaggaattatctgaac 212  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9682021 ccactggctcaaccgcgacatcatccaccaccaactgaccattaccattatcatttgtttcatcaaccattcgtttcatctgactaggaattatctgaac 9682120  T
Q  213 ccacaaatacaaaaacatcaaaaacaatcacaattagagatacacattgctgatttcgagaaaggagaattgaaaggggggtattgttaccatggcagga 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9682121 ccacaaatacaaaaacatcaaaaacaatcacaattagagatacacattgctgatttcgagaaaggagaattgaaaggggggtattgttaccatggcagga 9682220  T
Q  313 gtttgatcgggaatagcaaatccggctttgaggagactggaaccggcatcaattactgcagcttccatggctgtgaacagaggcggatctagacatttag 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9682221 gtttgatcgggaatagcaaatccggctttgaggagactggaaccggcatcaattactgcagcttccatggctgtgaacagaggcggatctagacatttag 9682320  T
Q  413 tctatgt 419  Q
    |||||||    
T  9682321 tctatgt 9682327  T

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