View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0935_high_5 (Length: 274)
Name: NF0935_high_5
Description: NF0935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0935_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 170; Significance: 3e-91; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 53 - 230
Target Start/End: Complemental strand, 34314152 - 34313975
Alignment:
| Q |
53 |
atattaaggtggtgatgtttgtttgttcaatttggtggaacagaattagtggtcttgttgcatatataagttgtaatgtggcatggttcataggaagttg |
152 |
Q |
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| T |
34314152 |
atattaaggtggtgatgtttgtttgttcaatttggtggaacagaattggtggtcttgttgcatatataggttgtaatgtggcatggttcataggaagttg |
34314053 |
T |
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| Q |
153 |
caacttgcaactgctggattgacgagtaagaagaagatttttgtgagttgagattgatcatgctaaattactatgcag |
230 |
Q |
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| T |
34314052 |
caacttgcaactgctggattgacgagtaagaagaagatttttgtgagttgagattgatcatgctaaattactatgcag |
34313975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 53 - 158
Target Start/End: Complemental strand, 33425990 - 33425884
Alignment:
| Q |
53 |
atattaaggtggtgatgtttgtttgttcaatttggtggaaca-gaattagtggtcttgttgcatatataagttgtaatgtggcatggttcataggaagtt |
151 |
Q |
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| T |
33425990 |
atattaaggtactgatgattgtttattcaatttggtggaaattgaattactggtcttgttgcttatataggttgtaatgtggaatggttgataggcagtt |
33425891 |
T |
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| Q |
152 |
gcaactt |
158 |
Q |
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| T |
33425890 |
gcaactt |
33425884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 102 - 203
Target Start/End: Original strand, 34317618 - 34317712
Alignment:
| Q |
102 |
tggtcttgttgcatatataagttgtaatgtggcatggttcataggaagttgcaacttgcaactgctggattgacgagtaagaagaagatttttgtgagtt |
201 |
Q |
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| T |
34317618 |
tggtcttgttgcatatatagattgtaatgtggcattgttcataggcag-------ttgcaactgctgaatagacgagtaagaagaagattgttgtgagtt |
34317710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 102 - 157
Target Start/End: Original strand, 34305114 - 34305169
Alignment:
| Q |
102 |
tggtcttgttgcatatataagttgtaatgtggcatggttcataggaagttgcaact |
157 |
Q |
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| T |
34305114 |
tggtcttgttgcatatataggttgtaatgtggcattgttcataggcagttgcaact |
34305169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 53 - 157
Target Start/End: Original strand, 25651723 - 25651833
Alignment:
| Q |
53 |
atattaaggtggtgatgtttgtttgttcaatttggtggaac-agaattagtggtcttgttgcat-----atataagttgtaatgtggcatggttcatagg |
146 |
Q |
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| T |
25651723 |
atattaaggtactgatgtttgtttattcaatttggtgcaaatagaattactggtcttgttgcattacatatataggttgtaatgtagcatggttcatagg |
25651822 |
T |
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| Q |
147 |
aagttgcaact |
157 |
Q |
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| T |
25651823 |
cagtttcaact |
25651833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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