View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0935_high_8 (Length: 246)
Name: NF0935_high_8
Description: NF0935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0935_high_8 |
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| [»] scaffold0288 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 74 - 242
Target Start/End: Original strand, 4661232 - 4661397
Alignment:
| Q |
74 |
aaatgcacttataaaacaaatgcataataataagtctctttcaaattcggaacaaaactcttgatttacaatcatggtatgaaccctttcatgtatgaaa |
173 |
Q |
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| T |
4661232 |
aaatgcacttataaaactaatgcataa---taagtctttttcaaattcggaacaaaactcttgatttacaatcatggtatgaaccctttcatgtatgaaa |
4661328 |
T |
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| Q |
174 |
tcagagcattatcttctttaaattccatgtttgatatctttgcacccttaattgatgttggacactcct |
242 |
Q |
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| T |
4661329 |
tcagagcattatcttctttaaattccatgtttgatatctttgcacccttaattgatgttggacactcct |
4661397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 4661003 - 4661093
Alignment:
| Q |
1 |
ttgtgaaaatctatgggctgtgttagagaaaatatataaacactnnnnnnntgagtatcattgttctataaataaatgcacttataaaaca |
91 |
Q |
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| T |
4661003 |
ttgtgaaaatctatgggctgtgttagagaaaatatataaacactaaaaaaatgagtatcattgttctataaataaatgcacttataaaaca |
4661093 |
T |
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Target: scaffold0288 (Bit Score: 143; Significance: 3e-75; HSPs: 2)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 74 - 242
Target Start/End: Original strand, 21403 - 21567
Alignment:
| Q |
74 |
aaatgcacttataaaacaaatgcataataataagtctctttcaaattcggaacaaaactcttgatttacaatcatggtatgaaccctttcatgtatgaaa |
173 |
Q |
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| T |
21403 |
aaatgcacttataaaactaatgcataataa---gtct-tttcaaattcggaacaaaactcttgatttacaatcatggtatgaaccctttcatgtatgaaa |
21498 |
T |
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| Q |
174 |
tcagagcattatcttctttaaattccatgtttgatatctttgcacccttaattgatgttggacactcct |
242 |
Q |
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| T |
21499 |
tcagagcattatcttctttaaattccatgtttgatatctttgcacccttaattgatgttggacactcct |
21567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 21170 - 21260
Alignment:
| Q |
1 |
ttgtgaaaatctatgggctgtgttagagaaaatatataaacactnnnnnnntgagtatcattgttctataaataaatgcacttataaaaca |
91 |
Q |
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| T |
21170 |
ttgtgaaaatctatgggctgtgttagagaaaatatataaacactaaaaaaatgagtatcattgttctataaataaatgcacttataaaaca |
21260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 151 - 239
Target Start/End: Complemental strand, 49319402 - 49319314
Alignment:
| Q |
151 |
tatgaaccctttcatgtatgaaatcagagcattatcttctttaaattccatgtttgatatctttgcacccttaattgatgttggacact |
239 |
Q |
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| T |
49319402 |
tatgaaccccttcatgtatgaaatcagagcatactcttcttcaaattccatgtttgatatcatagcacccttaattgatgttggacact |
49319314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 52 - 138
Target Start/End: Complemental strand, 49324264 - 49324177
Alignment:
| Q |
52 |
tgagtatcattgttctataaataa----atgcacttataaaacaaatgcataataataagtctctttcaaattcggaacaaaactcttgat |
138 |
Q |
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| T |
49324264 |
tgagtatcattgttctataaataattaaatgcacttataaaacaaatac---ataataagtgtctttccgattcggaacaaaactcttgat |
49324177 |
T |
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