View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0935_low_1 (Length: 534)
Name: NF0935_low_1
Description: NF0935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0935_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 219 - 516
Target Start/End: Complemental strand, 39092851 - 39092555
Alignment:
| Q |
219 |
ttctcagtcttaggtgtgctttaagttatcatatcaaaacccatgtgtgtgttacaaagaagttgttttgcttttatagttttttaattgaaacaacata |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39092851 |
ttctcagtcttaggtgtgctttaagttatcatatcaaaacccatgtgtgagttacaaagaagttgttttgcttttatagttttttaattgaaacaacata |
39092752 |
T |
|
| Q |
319 |
agatattatttctgatacatgagatgcatgagtgtagtactctagtaaataatattcgagcaatcttgacccaataagagagagaatataagatagttaa |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
39092751 |
agatattatttctgatacatgagatgcatgagtgtagtactctagtaaataatattcgagcaatcttgacccaa-aagagagagaatataagatagttaa |
39092653 |
T |
|
| Q |
419 |
tccccctgagtctgatcatcaaactacccaaaagaaagagtactaaaagttgttcatggattccatgaaagtgatatccacaacaacagttcaagcac |
516 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39092652 |
tccccctgagtctgatcatcaaactacccaaaagaaagagtaccaaaagttgttcatggattccatgaaagtgatatccacaacaacagttcaagcac |
39092555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 89 - 220
Target Start/End: Complemental strand, 39093035 - 39092904
Alignment:
| Q |
89 |
ggtttttcttggtttgtcttggaggcatttaacacgtattctattaagagttttatttaagtctctttactgttgttttatgtgtctacaaggggaatta |
188 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
39093035 |
ggtttttcttggtttgtcttggaggcatttaacatgtattctattaagagttttatttaagtctctttattgttgttttaggtgtctacaaggggaatta |
39092936 |
T |
|
| Q |
189 |
ttcttcacaaactttgattttgccctgtattt |
220 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| |
|
|
| T |
39092935 |
ttcttcacaaactttgattttggcctgtattt |
39092904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 468 - 516
Target Start/End: Complemental strand, 39089197 - 39089149
Alignment:
| Q |
468 |
ttgttcatggattccatgaaagtgatatccacaacaacagttcaagcac |
516 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
39089197 |
ttgttcatggcttccatcaaagtgatatccacaacaacagttcaagcac |
39089149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 471 - 516
Target Start/End: Complemental strand, 39083542 - 39083497
Alignment:
| Q |
471 |
ttcatggattccatgaaagtgatatccacaacaacagttcaagcac |
516 |
Q |
| |
|
|||||||||||||| | |||||||||||||||| ||||||||||| |
|
|
| T |
39083542 |
ttcatggattccattagtgtgatatccacaacaaaagttcaagcac |
39083497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University