View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0935_low_12 (Length: 298)
Name: NF0935_low_12
Description: NF0935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0935_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 29 - 287
Target Start/End: Complemental strand, 47319910 - 47319639
Alignment:
| Q |
29 |
attcttttggcattgtaatcaactacgagtttcaagaattcatcatacttttccatcttatctggaaatgcaactttaactgctgttgcaaacgacgttg |
128 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
47319910 |
attcttttggcattgtaatcaactacgagtttcaagaattcatcatacttttccatcttatatggaaatgcaactttaactgctgttgcaaacgacgttg |
47319811 |
T |
|
| Q |
129 |
ggaatagaagtgggatttcatctcctggtggcaagaagatgttgaatc-------------ttgatgttctttcaacaactccataattccttctttgat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
47319810 |
ggaatagaagtgggatttcatctcctggtggcaagaagatgttgaatcttgaaattaaatcttgatgttctttcaacaactccataattccttctttgat |
47319711 |
T |
|
| Q |
216 |
gactcttctatcaattcttttggccctgaaatcatgtaggagtttcatgaaatcatcaaacttttccttctt |
287 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47319710 |
gactcttctatcaattcttttggccctgaaatcatgtaggagtttcatgaaatcatcaaacttttccttctt |
47319639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 173 - 287
Target Start/End: Complemental strand, 47316243 - 47316129
Alignment:
| Q |
173 |
aatcttgatgttctttcaacaactccataattccttctttgatgactcttctatcaattcttttggccctgaaatcatgtaggagtttcatgaaatcatc |
272 |
Q |
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|||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||| | |||||| ||||||||||||| ||| || || |
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| T |
47316243 |
aatcttgatgttctttcaacaactccgtaactccttctttgacgactcttctatcaattcttttggcgccgaaatcttgtaggagtttcacgaattcttc |
47316144 |
T |
|
| Q |
273 |
aaacttttccttctt |
287 |
Q |
| |
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| || ||||| |||| |
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| T |
47316143 |
atacatttccctctt |
47316129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 173 - 278
Target Start/End: Complemental strand, 47314504 - 47314399
Alignment:
| Q |
173 |
aatcttgatgttctttcaacaactccataattccttctttgatgactcttctatcaattcttttggccctgaaatcatgtaggagtttcatgaaatcatc |
272 |
Q |
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|||||||||| ||||| ||||||||||||| ||||||||||| |||||| |||||||||||||||| | ||||||||||||||||||||||| || || |
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| T |
47314504 |
aatcttgatgctctttaaacaactccataactccttctttgacaactcttttatcaattcttttggcaccaaaatcatgtaggagtttcatgaactcgtc |
47314405 |
T |
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| Q |
273 |
aaactt |
278 |
Q |
| |
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|||||| |
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| T |
47314404 |
aaactt |
47314399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 29 - 124
Target Start/End: Complemental strand, 47314696 - 47314599
Alignment:
| Q |
29 |
attcttttggcattgtaatcaactacgagtttcaagaatt--catcatacttttccatcttatctggaaatgcaactttaactgctgttgcaaacgac |
124 |
Q |
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||||||||||||| ||||| ||||| |||||||| ||||| || ||||||||||| |||||| | |||||||||||||||| |||||| ||| |||| |
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| T |
47314696 |
attcttttggcatggtaattaactaggagtttcaggaattttcaccatacttttccctcttattttgaaatgcaactttaaccgctgttacaagcgac |
47314599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 29 - 115
Target Start/End: Complemental strand, 47316445 - 47316359
Alignment:
| Q |
29 |
attcttttggcattgtaatcaactacgagtttcaagaattcatcatacttttccatcttatctggaaatgcaactttaactgctgtt |
115 |
Q |
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||||||||||| | ||||||| ||| ||||||||||||||||| ||||||||||||||||| ||||| ||| |||||| ||||| |
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| T |
47316445 |
attcttttggcttggtaatcagctaggagtttcaagaattcattgaacttttccatcttatcttcaaatgtaaccttaacttctgtt |
47316359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 173 - 287
Target Start/End: Complemental strand, 47319966 - 47319852
Alignment:
| Q |
173 |
aatcttgatgttctttcaacaactccataattccttctttgatgactcttctatcaattcttttggccctgaaatcatgtaggagtttcatgaaatcatc |
272 |
Q |
| |
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|||||| ||| ||||| ||||||||||| | ||||||||||| ||||| |||||||||||||||| || ||||| || |||||||| ||| ||||| |
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| T |
47319966 |
aatctttatggtctttaaacaactccatcagtccttctttgaaaactctcatatcaattcttttggcattgtaatcaactacgagtttcaagaattcatc |
47319867 |
T |
|
| Q |
273 |
aaacttttccttctt |
287 |
Q |
| |
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| |||||||| |||| |
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| T |
47319866 |
atacttttccatctt |
47319852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 135 - 178
Target Start/End: Complemental strand, 47316294 - 47316251
Alignment:
| Q |
135 |
gaagtgggatttcatctcctggtggcaagaagatgttgaatctt |
178 |
Q |
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|||||| |||||||| |||||||||||||||||||||||||||| |
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| T |
47316294 |
gaagtgagatttcatgtcctggtggcaagaagatgttgaatctt |
47316251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 184 - 287
Target Start/End: Complemental strand, 47316490 - 47316387
Alignment:
| Q |
184 |
tctttcaacaactccataattccttctttgatgactcttctatcaattcttttggccctgaaatcatgtaggagtttcatgaaatcatcaaacttttcct |
283 |
Q |
| |
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||||| ||||||||||| ||||||||||||| |||||| ||||||||||||||| | ||||| ||||||||||| ||| |||| ||||||||| |
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| T |
47316490 |
tctttaaacaactccatcattccttctttgacaactcttacatcaattcttttggcttggtaatcagctaggagtttcaagaattcattgaacttttcca |
47316391 |
T |
|
| Q |
284 |
tctt |
287 |
Q |
| |
|
|||| |
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|
| T |
47316390 |
tctt |
47316387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 135 - 180
Target Start/End: Complemental strand, 47307136 - 47307091
Alignment:
| Q |
135 |
gaagtgggatttcatctcctggtggcaagaagatgttgaatcttga |
180 |
Q |
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|||||| |||||| | |||||||||||||||||||||||||||||| |
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| T |
47307136 |
gaagtgagatttcttgtcctggtggcaagaagatgttgaatcttga |
47307091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 180
Target Start/End: Complemental strand, 47311211 - 47311166
Alignment:
| Q |
135 |
gaagtgggatttcatctcctggtggcaagaagatgttgaatcttga |
180 |
Q |
| |
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|||||| |||||||| ||||| ||||| |||||||||||||||||| |
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| T |
47311211 |
gaagtgagatttcatgtcctgatggcatgaagatgttgaatcttga |
47311166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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