View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0935_low_16 (Length: 251)
Name: NF0935_low_16
Description: NF0935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0935_low_16 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 30 - 251
Target Start/End: Complemental strand, 43984938 - 43984717
Alignment:
| Q |
30 |
ttttggtgtatatactgtaacatataccttggttattgccacatttgagaatttgtggaattagctctctgtatttttatctctagtgagctaattttaa |
129 |
Q |
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| T |
43984938 |
ttttggtgtatatactgtaacatataccttggttattgccacatttgagaatttgtggaattagctctctgtatttttatctctagtgagctaattttaa |
43984839 |
T |
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| Q |
130 |
taagtgagcttcaaattatacactggaagcttatgattattttgtatctggtatagttaagaattaaagtggtgtgaaatcaatgaatgaagtcagttta |
229 |
Q |
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| T |
43984838 |
taagtgagcttcaaattatacactggaagcttatgattattttgtatctggtatagttaagaattaaagtggtgtgaaatcaatgaatgaagtcagttta |
43984739 |
T |
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| Q |
230 |
gattacttcaagttctcttttt |
251 |
Q |
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|||||||||||||||||||||| |
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| T |
43984738 |
gattacttcaagttctcttttt |
43984717 |
T |
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