View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0935_low_2 (Length: 524)

Name: NF0935_low_2
Description: NF0935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0935_low_2
NF0935_low_2
[»] chr2 (2 HSPs)
chr2 (1-514)||(44566007-44566501)
chr2 (49-514)||(36032681-36033142)
[»] chr4 (2 HSPs)
chr4 (108-257)||(20121896-20122045)
chr4 (337-396)||(20122158-20122217)


Alignment Details
Target: chr2 (Bit Score: 444; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 1 - 514
Target Start/End: Original strand, 44566007 - 44566501
Alignment:
Q  1 atgatggtatcaaccggacgaatattgcgggcctatacaattttcctttcaccatgatttgatcactttagtgtctgtaataaaagtaatatgtttgaca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  44566007 atgatggtatcaaccggacgaatattgcgggcctatacaattttcctttcaccatgatatgatcactttagtgtctgtaataaaagtaatatgtttgaca 44566106  T
Q  101 tctcaattttcaggtttatcaatcccgtggttgtatcctcaaccattgctgcagttggactttcattctatagctatggttttcctctagttggcacgtg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                   ||||||||||||||||||    
T  44566107 tctcaattttcaggtttatcaatcccgtggttgtatcctcaaccattgctgcagttggacttt-------------------tcctctagttggcacgtg 44566187  T
Q  201 tcttgagatcggtgcagtacagatattagtgtttattgttttttgtcttgtaagtttgttgaattcagattcctactttgtctatggtattaatcgttgc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44566188 tcttgagatcggtgcagtacagatattagtgtttattgttttttgtcttgtaagtttgttgaattcagattcctactttgtctatggtattaatcgttgc 44566287  T
Q  301 agtgtgctgatatattttattatatattgcttttggcagtatcttcgtaagatatctgtttttggacatcacatatttcagatatatgcagtaagtctaa 400  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44566288 agtgtgctgatatattttattatatattgctttttgcagtatcttcgtaagatatctgtttttggacatcacatatttcagatatatgcagtaagtctaa 44566387  T
Q  401 tgccacattattcttctgagttgctcttcagaagagaaaataaatttctgtggtgtaaaaaatgatttttgttaagtgatattattttctttacctaatt 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44566388 tgccacattattcttctgagttgctcttcagaagagaaaataaatttctgtggtgtaaaaaatgatttttgttaagtgatattattttctttacctaatt 44566487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 49 - 514
Target Start/End: Complemental strand, 36033142 - 36032681
Alignment:
Q  49 tcaccatgatttgatcactttagtgtctgtaataaaagtaatatgtttgacatctcaattttcaggtttatcaatcccgtggttgtatcctcaaccattg 148  Q
    ||||||| ||||||||||| | | || || ||| ||||||||||||||  ||||||||||||||||||||||||||| |||||||||||| |||||||||    
T  36033142 tcaccataatttgatcactgttgggtttgaaatcaaagtaatatgttttgcatctcaattttcaggtttatcaatcctgtggttgtatccccaaccattg 36033043  T
Q  149 ctgcagttggactttcattctatagctatggttttcctctagttggcacgtgtcttgagatcggtgcagtacagatattagtgtttattgttttttgtct 248  Q
    ||||||||||||||||||| ||| | |||||||||||||| |||||||| ||| ||||||| |||||| |||| ||||||||| ||||||||||||  ||    
T  36033042 ctgcagttggactttcattttatggttatggttttcctcttgttggcacatgtattgagattggtgcaatacaaatattagtggttattgttttttccct 36032943  T
Q  249 tgtaagtttgttgaattcagattcctactttgtctatggtattaatcgttgcagtgtgctgatatattttattatatattgcttttggcagtatcttcgt 348  Q
    ||||||     |||||||||| ||| ||||||||||||||||| ||| |  |   | |||||  |  |  ||| | |||||||||  |||||||||||||    
T  36032942 tgtaag-----tgaattcagactcccactttgtctatggtattgatcatcac---gcgctgacttcatccattttttattgctttctgcagtatcttcgt 36032851  T
Q  349 aagatatctgtttttggacatcacatatttcagatatatgcagtaagtctaatgccacattattcttctgagttgctcttcagaagagaaaataaatttc 448  Q
    |||||||||||| ||||||| | ||||||||  |||||||||||||||  ||||||| | ||| |||| ||||| ||||  || || |||||||||||||    
T  36032850 aagatatctgttcttggacaccgcatatttctaatatatgcagtaagtgcaatgccataatatccttccgagttactctatagcagtgaaaataaatttc 36032751  T
Q  449 tgtggtgtaaaaaatgatttttgttaagtgatat----tattttctttacctaatttacaggtgcctttg 514  Q
    ||  |||||| ||||||||| ||||||||||| |    |||||| |||||||||||| ||||| ||||||    
T  36032750 tgctgtgtaacaaatgatttctgttaagtgatgttatatattttttttacctaatttgcaggttcctttg 36032681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 4e-24; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 108 - 257
Target Start/End: Original strand, 20121896 - 20122045
Alignment:
Q  108 tttcaggtttatcaatcccgtggttgtatcctcaaccattgctgcagttggactttcattctatagctatggttttcctctagttggcacgtgtcttgag 207  Q
    ||||||| | |||||||| || ||||||||| |||| ||||||||||||||||||||||| |  || || || || ||  |||| || || |||||||||    
T  20121896 tttcagggtgatcaatcctgtagttgtatccccaactattgctgcagttggactttcatttttcagttacggattcccattagtgggtacatgtcttgag 20121995  T
Q  208 atcggtgcagtacagatattagtgtttattgttttttgtcttgtaagttt 257  Q
    || ||||||||||||||||||||| |||||||||| | ||||| ||||||    
T  20121996 attggtgcagtacagatattagtggttattgttttctctcttggaagttt 20122045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 337 - 396
Target Start/End: Original strand, 20122158 - 20122217
Alignment:
Q  337 cagtatcttcgtaagatatctgtttttggacatcacatatttcagatatatgcagtaagt 396  Q
    |||||||||||||||||||||||| ||||||||| ||||||||  || || |||||||||    
T  20122158 cagtatcttcgtaagatatctgttcttggacatcgcatatttctaatctacgcagtaagt 20122217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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