View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0935_low_5 (Length: 482)

Name: NF0935_low_5
Description: NF0935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0935_low_5
NF0935_low_5
[»] chr1 (16 HSPs)
chr1 (8-453)||(40780383-40780833)
chr1 (8-63)||(25788680-25788735)
chr1 (8-62)||(42560995-42561049)
chr1 (251-319)||(3157706-3157772)
chr1 (14-66)||(12689834-12689886)
chr1 (7-66)||(29068691-29068750)
chr1 (12-58)||(10385153-10385199)
chr1 (8-66)||(11067131-11067189)
chr1 (285-319)||(12522140-12522174)
chr1 (282-320)||(19316182-19316220)
chr1 (8-62)||(40368044-40368098)
chr1 (286-319)||(12783723-12783756)
chr1 (280-325)||(48318282-48318327)
chr1 (286-319)||(48681955-48681988)
chr1 (286-319)||(50595905-50595938)
chr1 (286-326)||(2817395-2817435)
[»] chr4 (12 HSPs)
chr4 (9-62)||(32639958-32640011)
chr4 (285-320)||(28568210-28568245)
chr4 (286-325)||(39093597-39093636)
chr4 (286-324)||(7282558-7282596)
chr4 (286-319)||(3936633-3936666)
chr4 (286-319)||(12192513-12192546)
chr4 (22-62)||(376199-376239)
chr4 (9-65)||(7456677-7456733)
chr4 (280-324)||(30305979-30306023)
chr4 (280-324)||(36059029-36059073)
chr4 (286-326)||(45837141-45837181)
chr4 (286-318)||(53468593-53468625)
[»] chr2 (14 HSPs)
chr2 (8-61)||(33133700-33133753)
chr2 (6-66)||(20110957-20111017)
chr2 (9-66)||(16568234-16568291)
chr2 (285-319)||(9517030-9517064)
chr2 (285-319)||(23984010-23984044)
chr2 (286-320)||(28202411-28202445)
chr2 (8-66)||(31516477-31516535)
chr2 (8-66)||(31525229-31525287)
chr2 (286-327)||(16221368-16221409)
chr2 (286-319)||(20455897-20455930)
chr2 (286-327)||(25274851-25274892)
chr2 (286-319)||(32204550-32204583)
chr2 (286-319)||(41668661-41668694)
chr2 (22-66)||(39271643-39271687)
[»] chr7 (13 HSPs)
chr7 (8-66)||(5357328-5357386)
chr7 (282-324)||(21099791-21099833)
chr7 (9-66)||(27362805-27362862)
chr7 (13-65)||(5468054-5468106)
chr7 (286-324)||(9522913-9522951)
chr7 (286-324)||(46185195-46185233)
chr7 (9-46)||(678638-678675)
chr7 (282-319)||(5526731-5526768)
chr7 (9-66)||(35070980-35071037)
chr7 (286-315)||(45088886-45088915)
chr7 (9-66)||(47118736-47118793)
chr7 (280-320)||(20205827-20205867)
chr7 (9-65)||(35791917-35791973)
[»] scaffold0009 (1 HSPs)
scaffold0009 (9-62)||(53676-53729)
[»] chr8 (11 HSPs)
chr8 (8-61)||(19341828-19341881)
chr8 (252-328)||(13284255-13284329)
chr8 (285-315)||(10732796-10732826)
chr8 (16-66)||(16936355-16936405)
chr8 (9-66)||(11911999-11912055)
chr8 (286-319)||(37117546-37117579)
chr8 (286-315)||(38488029-38488058)
chr8 (286-315)||(41603071-41603100)
chr8 (8-68)||(11439104-11439164)
chr8 (22-66)||(18279407-18279451)
chr8 (264-312)||(32232379-32232425)
[»] chr6 (12 HSPs)
chr6 (9-66)||(2536594-2536651)
chr6 (10-61)||(20433018-20433069)
chr6 (17-62)||(23958778-23958823)
chr6 (8-66)||(11734189-11734247)
chr6 (289-327)||(20698120-20698158)
chr6 (286-319)||(33938701-33938734)
chr6 (9-66)||(34672631-34672688)
chr6 (8-68)||(3533191-3533250)
chr6 (282-322)||(5008842-5008882)
chr6 (280-320)||(6283941-6283981)
chr6 (8-44)||(16260397-16260433)
chr6 (287-319)||(29740488-29740520)
[»] chr5 (6 HSPs)
chr5 (286-324)||(12909188-12909226)
chr5 (13-66)||(28479512-28479565)
chr5 (285-319)||(41939283-41939317)
chr5 (282-319)||(10199025-10199062)
chr5 (286-319)||(31602847-31602880)
chr5 (282-327)||(37054287-37054332)
[»] chr3 (12 HSPs)
chr3 (11-66)||(49758125-49758180)
chr3 (8-38)||(31293076-31293106)
chr3 (8-54)||(34666963-34667009)
chr3 (286-324)||(43630440-43630478)
chr3 (286-319)||(10840424-10840457)
chr3 (282-315)||(38559914-38559947)
chr3 (285-326)||(38869539-38869580)
chr3 (286-319)||(43490439-43490472)
chr3 (9-65)||(26976172-26976228)
chr3 (22-58)||(28370420-28370456)
chr3 (22-58)||(28378242-28378278)
chr3 (22-58)||(28386060-28386096)
[»] scaffold0334 (1 HSPs)
scaffold0334 (286-320)||(5187-5221)
[»] scaffold0043 (1 HSPs)
scaffold0043 (9-66)||(72082-72139)
[»] scaffold0013 (1 HSPs)
scaffold0013 (8-61)||(96991-97044)
[»] scaffold0008 (1 HSPs)
scaffold0008 (286-315)||(122901-122930)
[»] scaffold1017 (1 HSPs)
scaffold1017 (10-66)||(2084-2140)


Alignment Details
Target: chr1 (Bit Score: 286; Significance: 1e-160; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 8 - 453
Target Start/End: Complemental strand, 40780833 - 40780383
Alignment:
Q  8 ccaacaatataatattattatagaaaaatttatttaaagatgtaattggaataataaaatagccgtcacaatctcatatttcatttctc---atgtgaga 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    ||||||||    
T  40780833 ccaacaatataatattattatagaaaaatttatttaaagatgtaattggaataataaaatagccgtcacaatctcatatttcacttcttcttatgtgaga 40780734  T
Q  105 ctcttaacatctccttcacaaccaagattatgacgtgtgaacctaacaacaaatgtctctatagatattgaatagactctaacacaactccttaacaaaa 204  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  40780733 ctcttaacatctccttcacaaccaagattatgacgtgtgaatctaacaacaaatgtctctccagatattgaatagactctaacacaactccttaacaaaa 40780634  T
Q  205 cttacttgtaagatgatggcttctcccatttgtaaatannnnnnnnggtggtagttggggtttgaacttcaaagtctttatatatattatgcattgttca 304  Q
    ||||||||||||||||||||||||||||||||||||||        |||| | || |||||||||||| |||  |  || |||||||||| |||||||||    
T  40780633 cttacttgtaagatgatggcttctcccatttgtaaatactttttttggtgatggtcggggtttgaactccaacattcttgtatatattatacattgttca 40780534  T
Q  305 taccaattgagctaaattcatgaaatcccatttgtgaaaatacttgttcacgccaaatcatttttcat----nnnnnnnctcaacaattagatctgcgta 400  Q
    ||||||||||||||| || | |||||||||||| |  |||||||||||||||||||||||||||||||           || ||||||||||||||||||    
T  40780533 taccaattgagctaagtttacgaaatcccatttat--aaatacttgttcacgccaaatcatttttcatcaaaaaagactcttaacaattagatctgcgta 40780436  T
Q  401 tcaattagccgattcgtgtacaagaattctttttagaactacagatagcatac 453  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40780435 tcaattagccgattcgtgtacaagaattctttttagaactacagatagcatac 40780383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 25788735 - 25788680
Alignment:
Q  8 ccaacaatataatattattatagaaaaatttatttaaagatgtaattggaataata 63  Q
    ||||||||||||||||||||||||||||||| ||||||| | ||  ||||||||||    
T  25788735 ccaacaatataatattattatagaaaaatttgtttaaaggtatatctggaataata 25788680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 42560995 - 42561049
Alignment:
Q  8 ccaacaatataatattattatagaaaaatttatttaaagatgtaattggaataat 62  Q
    |||||||||||| |||||||||||||||||| ||||| | | |||||||||||||    
T  42560995 ccaacaatataacattattatagaaaaatttgtttaagggtataattggaataat 42561049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 251 - 319
Target Start/End: Original strand, 3157706 - 3157772
Alignment:
Q  251 ggtggtagttggggtttgaacttcaaagtctttatatatattatgcattgttcataccaattgagctaa 319  Q
    |||||| |||||||||||||| |||||  | || |||||||||||||||||||| || |||||||||||    
T  3157706 ggtggtggttggggtttgaacctcaaa--ccttgtatatattatgcattgttcaaactaattgagctaa 3157772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 12689886 - 12689834
Alignment:
Q  14 atataatattattatagaaaaatttatttaaagatgtaattggaataataaaa 66  Q
    |||||||||||||||| |||||||||||||||  | |||||||||||| ||||    
T  12689886 atataatattattatataaaaatttatttaaatgtataattggaataacaaaa 12689834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 66
Target Start/End: Original strand, 29068691 - 29068750
Alignment:
Q  7 tccaacaatataatattattatagaaaaatttatttaaagatgtaattggaataataaaa 66  Q
    ||||||||||||| || ||||||||||||||| |||  || | |||||||||||||||||    
T  29068691 tccaacaatataacatcattatagaaaaatttgtttgtaggtataattggaataataaaa 29068750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 10385199 - 10385153
Alignment:
Q  12 caatataatattattatagaaaaatttatttaaagatgtaattggaa 58  Q
    |||||||| |||||||||||||||||||||| || || |||||||||    
T  10385199 caatataacattattatagaaaaatttatttgaaaatataattggaa 10385153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 11067131 - 11067189
Alignment:
Q  8 ccaacaatataatattattatagaaaaatttatttaaagatgtaattggaataataaaa 66  Q
    |||||||||||| ||||||||  |||| ||||||||| ||| |||||||||||| ||||    
T  11067131 ccaacaatataacattattattaaaaattttatttaaggatataattggaataacaaaa 11067189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 285 - 319
Target Start/End: Original strand, 12522140 - 12522174
Alignment:
Q  285 tatatattatgcattgttcataccaattgagctaa 319  Q
    |||||||||||| ||||||||||||||||||||||    
T  12522140 tatatattatgcgttgttcataccaattgagctaa 12522174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 282 - 320
Target Start/End: Complemental strand, 19316220 - 19316182
Alignment:
Q  282 ttatatatattatgcattgttcataccaattgagctaaa 320  Q
    |||||||||||||||||||||||||| ||||||| ||||    
T  19316220 ttatatatattatgcattgttcatactaattgagttaaa 19316182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 40368098 - 40368044
Alignment:
Q  8 ccaacaatataatattattatagaaaaatttatttaaagatgtaattggaataat 62  Q
    |||||||||||| |||| ||||||||||||| ||||| | | |||||||||||||    
T  40368098 ccaacaatataacattaatatagaaaaatttgtttaagggtataattggaataat 40368044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 319
Target Start/End: Original strand, 12783723 - 12783756
Alignment:
Q  286 atatattatgcattgttcataccaattgagctaa 319  Q
    |||||||||||||||| |||||||||||||||||    
T  12783723 atatattatgcattgtccataccaattgagctaa 12783756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 325
Target Start/End: Original strand, 48318282 - 48318327
Alignment:
Q  280 ctttatatatattatgcattgttcataccaattgagctaaattcat 325  Q
    ||||| |||||||||||||||||| ||| |||||||||||| ||||    
T  48318282 ctttacatatattatgcattgttcctacgaattgagctaaactcat 48318327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 319
Target Start/End: Original strand, 48681955 - 48681988
Alignment:
Q  286 atatattatgcattgttcataccaattgagctaa 319  Q
    ||||||||||||||||||||||||| ||||||||    
T  48681955 atatattatgcattgttcataccaactgagctaa 48681988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 319
Target Start/End: Original strand, 50595905 - 50595938
Alignment:
Q  286 atatattatgcattgttcataccaattgagctaa 319  Q
    |||| |||||||||||||||||||||||||||||    
T  50595905 atattttatgcattgttcataccaattgagctaa 50595938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 286 - 326
Target Start/End: Original strand, 2817395 - 2817435
Alignment:
Q  286 atatattatgcattgttcataccaattgagctaaattcatg 326  Q
    |||||||||||||||| | |||||| |||||||||||||||    
T  2817395 atatattatgcattgtccttaccaactgagctaaattcatg 2817435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 9 - 62
Target Start/End: Original strand, 32639958 - 32640011
Alignment:
Q  9 caacaatataatattattatagaaaaatttatttaaagatgtaattggaataat 62  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| |||||||    
T  32639958 caacaatataacattattatagaaaaatttatttaaagatgtaatttgaataat 32640011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 285 - 320
Target Start/End: Complemental strand, 28568245 - 28568210
Alignment:
Q  285 tatatattatgcattgttcataccaattgagctaaa 320  Q
    ||||||||||||||||||||||||||||||||||||    
T  28568245 tatatattatgcattgttcataccaattgagctaaa 28568210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 286 - 325
Target Start/End: Original strand, 39093597 - 39093636
Alignment:
Q  286 atatattatgcattgttcataccaattgagctaaattcat 325  Q
    |||||||||||||||| | |||||||||||||||||||||    
T  39093597 atatattatgcattgtccttaccaattgagctaaattcat 39093636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 286 - 324
Target Start/End: Complemental strand, 7282596 - 7282558
Alignment:
Q  286 atatattatgcattgttcataccaattgagctaaattca 324  Q
    ||||||||||||||||||||||||| |||||||| ||||    
T  7282596 atatattatgcattgttcataccaactgagctaagttca 7282558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 319
Target Start/End: Complemental strand, 3936666 - 3936633
Alignment:
Q  286 atatattatgcattgttcataccaattgagctaa 319  Q
    ||||||||||||||||||||||||| ||||||||    
T  3936666 atatattatgcattgttcataccaactgagctaa 3936633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 319
Target Start/End: Original strand, 12192513 - 12192546
Alignment:
Q  286 atatattatgcattgttcataccaattgagctaa 319  Q
    ||||||||||||||||||||||||||||| ||||    
T  12192513 atatattatgcattgttcataccaattgaactaa 12192546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 22 - 62
Target Start/End: Complemental strand, 376239 - 376199
Alignment:
Q  22 ttattatagaaaaatttatttaaagatgtaattggaataat 62  Q
    |||||||||||||| |||||||||||| ||||||| |||||    
T  376239 ttattatagaaaaaattatttaaagatataattgggataat 376199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 7456677 - 7456733
Alignment:
Q  9 caacaatataatattattatagaaaaatttatttaaagatgtaattggaataataaa 65  Q
    ||||||||||| |||||||||||| ||||| | ||| | | ||||||||||||||||    
T  7456677 caacaatataacattattatagaataatttttctaagggtataattggaataataaa 7456733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 280 - 324
Target Start/End: Complemental strand, 30306023 - 30305979
Alignment:
Q  280 ctttatatatattatgcattgttcataccaattgagctaaattca 324  Q
    |||||||||| |||||||||||||||||||| ||| |||| ||||    
T  30306023 ctttatatattttatgcattgttcataccaactgaactaagttca 30305979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 280 - 324
Target Start/End: Complemental strand, 36059073 - 36059029
Alignment:
Q  280 ctttatatatattatgcattgttcataccaattgagctaaattca 324  Q
    |||||| ||| |||||||||||||||||||| |||||||| ||||    
T  36059073 ctttatgtattttatgcattgttcataccaactgagctaagttca 36059029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 286 - 326
Target Start/End: Original strand, 45837141 - 45837181
Alignment:
Q  286 atatattatgcattgttcataccaattgagctaaattcatg 326  Q
    |||||||||||||||| |||||||| |||||||| ||||||    
T  45837141 atatattatgcattgtccataccaactgagctaagttcatg 45837181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 286 - 318
Target Start/End: Original strand, 53468593 - 53468625
Alignment:
Q  286 atatattatgcattgttcataccaattgagcta 318  Q
    |||| ||||||||||||||||||||||||||||    
T  53468593 atattttatgcattgttcataccaattgagcta 53468625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 33133700 - 33133753
Alignment:
Q  8 ccaacaatataatattattatagaaaaatttatttaaagatgtaattggaataa 61  Q
    ||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||    
T  33133700 ccaacaataaaatattattatagaaaaatttatttaaggatataattggaataa 33133753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 20111017 - 20110957
Alignment:
Q  6 ctccaacaatataatattattatagaaaaatttatttaaagatgtaattggaataataaaa 66  Q
    |||||||||||||||||||||||| |||||||||||||| | | |||||| ||||| ||||    
T  20111017 ctccaacaatataatattattatataaaaatttatttaagggtataattgaaataacaaaa 20110957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 16568291 - 16568234
Alignment:
Q  9 caacaatataatattattatagaaaaatttatttaaagatgtaattggaataataaaa 66  Q
    ||||||||||| |||| ||||||||||||||||||||| | |||||  ||||||||||    
T  16568291 caacaatataacattagtatagaaaaatttatttaaaggtataattaaaataataaaa 16568234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 285 - 319
Target Start/End: Original strand, 9517030 - 9517064
Alignment:
Q  285 tatatattatgcattgttcataccaattgagctaa 319  Q
    |||||||||||||||||||||||||| ||||||||    
T  9517030 tatatattatgcattgttcataccaactgagctaa 9517064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 285 - 319
Target Start/End: Complemental strand, 23984044 - 23984010
Alignment:
Q  285 tatatattatgcattgttcataccaattgagctaa 319  Q
    ||||||||||||||||| |||||||||||||||||    
T  23984044 tatatattatgcattgtccataccaattgagctaa 23984010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 286 - 320
Target Start/End: Complemental strand, 28202445 - 28202411
Alignment:
Q  286 atatattatgcattgttcataccaattgagctaaa 320  Q
    |||||||||||||||| ||||||||||||||||||    
T  28202445 atatattatgcattgtccataccaattgagctaaa 28202411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 31516535 - 31516477
Alignment:
Q  8 ccaacaatataatattattatagaaaaatttatttaaagatgtaattggaataataaaa 66  Q
    |||| ||||||| |||| ||||||||||||| ||||| ||| |||||||||| ||||||    
T  31516535 ccaataatataacattaatatagaaaaatttgtttaacgatataattggaattataaaa 31516477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 31525287 - 31525229
Alignment:
Q  8 ccaacaatataatattattatagaaaaatttatttaaagatgtaattggaataataaaa 66  Q
    |||| ||||||| |||| ||||||||||||||||||| | | |||||||||| ||||||    
T  31525287 ccaataatataacattaatatagaaaaatttatttaagggtataattggaattataaaa 31525229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 327
Target Start/End: Original strand, 16221368 - 16221409
Alignment:
Q  286 atatattatgcattgttcataccaattgagctaaattcatga 327  Q
    |||| |||||||||||||||||||| ||||||||| ||||||    
T  16221368 atattttatgcattgttcataccaactgagctaaactcatga 16221409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 319
Target Start/End: Complemental strand, 20455930 - 20455897
Alignment:
Q  286 atatattatgcattgttcataccaattgagctaa 319  Q
    |||||||||||||||| |||||||||||||||||    
T  20455930 atatattatgcattgtccataccaattgagctaa 20455897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 327
Target Start/End: Original strand, 25274851 - 25274892
Alignment:
Q  286 atatattatgcattgttcataccaattgagctaaattcatga 327  Q
    |||||||||||||||||| |||||| |||||||| |||||||    
T  25274851 atatattatgcattgttcttaccaactgagctaatttcatga 25274892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 319
Target Start/End: Complemental strand, 32204583 - 32204550
Alignment:
Q  286 atatattatgcattgttcataccaattgagctaa 319  Q
    |||||||||||||||||||| |||||||||||||    
T  32204583 atatattatgcattgttcatgccaattgagctaa 32204550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 319
Target Start/End: Complemental strand, 41668694 - 41668661
Alignment:
Q  286 atatattatgcattgttcataccaattgagctaa 319  Q
    ||||||||||||||||||||||||| ||||||||    
T  41668694 atatattatgcattgttcataccaactgagctaa 41668661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 39271643 - 39271687
Alignment:
Q  22 ttattatagaaaaatttatttaaagatgtaattggaataataaaa 66  Q
    |||||||||||||| |||||||| ||| ||||||| |||||||||    
T  39271643 ttattatagaaaaaattatttaaggatataattgggataataaaa 39271687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 5357386 - 5357328
Alignment:
Q  8 ccaacaatataatattattatagaaaaatttatttaaagatgtaattggaataataaaa 66  Q
    ||||| ||||||| |||||||||||||| |||||||| ||| |||||||||||||||||    
T  5357386 ccaactatataatcttattatagaaaaaattatttaaggatataattggaataataaaa 5357328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 282 - 324
Target Start/End: Original strand, 21099791 - 21099833
Alignment:
Q  282 ttatatatattatgcattgttcataccaattgagctaaattca 324  Q
    |||||||||||||||||||| |||||||| |||||||||||||    
T  21099791 ttatatatattatgcattgtccataccaactgagctaaattca 21099833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 27362862 - 27362805
Alignment:
Q  9 caacaatataatattattatagaaaaatttatttaaagatgtaattggaataataaaa 66  Q
    ||||||||||| ||||||| |||||||||| |||||| || |||||||| ||||||||    
T  27362862 caacaatataacattattaaagaaaaatttgtttaaaaatataattggagtaataaaa 27362805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 5468106 - 5468054
Alignment:
Q  13 aatataatattattatagaaaaatttatttaaagatgtaattggaataataaa 65  Q
    ||||||| |||||||||||||||||||||||  | | ||||||||||||||||    
T  5468106 aatataacattattatagaaaaatttatttacgggtataattggaataataaa 5468054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 286 - 324
Target Start/End: Complemental strand, 9522951 - 9522913
Alignment:
Q  286 atatattatgcattgttcataccaattgagctaaattca 324  Q
    ||||||||||||||||||||||||| |||||||| ||||    
T  9522951 atatattatgcattgttcataccaactgagctaagttca 9522913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 286 - 324
Target Start/End: Original strand, 46185195 - 46185233
Alignment:
Q  286 atatattatgcattgttcataccaattgagctaaattca 324  Q
    |||| ||||||||||||| ||||||||||||||||||||    
T  46185195 atattttatgcattgttcctaccaattgagctaaattca 46185233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 678675 - 678638
Alignment:
Q  9 caacaatataatattattatagaaaaatttatttaaag 46  Q
    ||||||||||| ||||||||| ||||||||||||||||    
T  678675 caacaatataacattattatacaaaaatttatttaaag 678638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 319
Target Start/End: Complemental strand, 5526768 - 5526731
Alignment:
Q  282 ttatatatattatgcattgttcataccaattgagctaa 319  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  5526768 ttatatatattatgcattgtccataccaactgagctaa 5526731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 35070980 - 35071037
Alignment:
Q  9 caacaatataatattattatagaaaaatttatttaaagatgtaattggaataataaaa 66  Q
    ||||||||||| ||||||||||||| |||||||||| | | ||| |||||||| ||||    
T  35070980 caacaatataacattattatagaaatatttatttaagggtataactggaataacaaaa 35071037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 315
Target Start/End: Complemental strand, 45088915 - 45088886
Alignment:
Q  286 atatattatgcattgttcataccaattgag 315  Q
    ||||||||||||||||||||||||||||||    
T  45088915 atatattatgcattgttcataccaattgag 45088886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 47118736 - 47118793
Alignment:
Q  9 caacaatataatattattatagaaaaatttatttaaagatgtaattggaataataaaa 66  Q
    ||||| ||||| |||||||||||||||||||||||   ||||||||  ||||||||||    
T  47118736 caacattataacattattatagaaaaatttatttatgaatgtaattaaaataataaaa 47118793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 280 - 320
Target Start/End: Complemental strand, 20205867 - 20205827
Alignment:
Q  280 ctttatatatattatgcattgttcataccaattgagctaaa 320  Q
    ||||| |||||||||||||||| |||||||| |||||||||    
T  20205867 ctttacatatattatgcattgtccataccaactgagctaaa 20205827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 35791973 - 35791917
Alignment:
Q  9 caacaatataatattattatagaaaaatttatttaaagatgtaattggaataataaa 65  Q
    ||||||||||| |||||||||| ||||||| ||||||| | |||||  |||||||||    
T  35791973 caacaatataacattattataggaaaatttgtttaaaggtataattaaaataataaa 35791917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 9 - 62
Target Start/End: Complemental strand, 53729 - 53676
Alignment:
Q  9 caacaatataatattattatagaaaaatttatttaaagatgtaattggaataat 62  Q
    ||||||||||| |||||||||||||||||| ||||||||| |||||| ||||||    
T  53729 caacaatataacattattatagaaaaatttgtttaaagatataattgaaataat 53676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 19341881 - 19341828
Alignment:
Q  8 ccaacaatataatattattatagaaaaatttatttaaagatgtaattggaataa 61  Q
    |||||||||||| ||||||||||||||| |||||||||||| |||||| |||||    
T  19341881 ccaacaatataacattattatagaaaaaattatttaaagatataattgaaataa 19341828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 252 - 328
Target Start/End: Original strand, 13284255 - 13284329
Alignment:
Q  252 gtggtagttggggtttgaacttcaaagtctttatatatattatgcattgttcataccaattgagctaaattcatgaa 328  Q
    ||||| |||||||||||||| |||||  | ||||||||||||| ||||||||||| ||| |||| |||| |||||||    
T  13284255 gtggtggttggggtttgaacctcaaa--ccttatatatattatacattgttcatatcaactgagttaaactcatgaa 13284329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 285 - 315
Target Start/End: Original strand, 10732796 - 10732826
Alignment:
Q  285 tatatattatgcattgttcataccaattgag 315  Q
    |||||||||||||||||||||||||||||||    
T  10732796 tatatattatgcattgttcataccaattgag 10732826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 16936405 - 16936355
Alignment:
Q  16 ataatattattatagaaaaatttatttaaagatgtaattggaataataaaa 66  Q
    ||||||||||||||  ||||||||||||| | | |||||||||||||||||    
T  16936405 ataatattattataagaaaatttatttaagggtataattggaataataaaa 16936355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 11912055 - 11911999
Alignment:
Q  9 caacaatataatattattatagaaaaatttatttaaagatgtaattggaataataaaa 66  Q
    ||||||||||||||||| ||||||||  |||||||| | | |||||||||||||||||    
T  11912055 caacaatataatattat-atagaaaatattatttaagggtataattggaataataaaa 11911999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 319
Target Start/End: Original strand, 37117546 - 37117579
Alignment:
Q  286 atatattatgcattgttcataccaattgagctaa 319  Q
    ||||||||||||||||||||||||||||| ||||    
T  37117546 atatattatgcattgttcataccaattgatctaa 37117579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 315
Target Start/End: Original strand, 38488029 - 38488058
Alignment:
Q  286 atatattatgcattgttcataccaattgag 315  Q
    ||||||||||||||||||||||||||||||    
T  38488029 atatattatgcattgttcataccaattgag 38488058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 315
Target Start/End: Complemental strand, 41603100 - 41603071
Alignment:
Q  286 atatattatgcattgttcataccaattgag 315  Q
    ||||||||||||||||||||||||||||||    
T  41603100 atatattatgcattgttcataccaattgag 41603071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 8 - 68
Target Start/End: Original strand, 11439104 - 11439164
Alignment:
Q  8 ccaacaatataatattattatagaaaaatttatttaaagatgtaattggaataataaaata 68  Q
    |||| |||||||||||||||||  ||||||| ||||||  | ||||| |||||||||||||    
T  11439104 ccaaaaatataatattattataagaaaatttgtttaaaagtataattagaataataaaata 11439164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 18279407 - 18279451
Alignment:
Q  22 ttattatagaaaaatttatttaaagatgtaattggaataataaaa 66  Q
    |||||||||||||| |||||||| | | |||||||||||||||||    
T  18279407 ttattatagaaaaagttatttaagggtataattggaataataaaa 18279451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 264 - 312
Target Start/End: Original strand, 32232379 - 32232425
Alignment:
Q  264 gtttgaacttcaaagtctttatatatattatgcattgttcataccaatt 312  Q
    |||||||||||||| |||| ||||||||||||||||||||||| |||||    
T  32232379 gtttgaacttcaaa-tctt-atatatattatgcattgttcatatcaatt 32232425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 2536594 - 2536651
Alignment:
Q  9 caacaatataatattattatagaaaaatttatttaaagatgtaattggaataataaaa 66  Q
    |||||||||||||||||||||||||||||| |||||| || |||||| ||||| ||||    
T  2536594 caacaatataatattattatagaaaaatttgtttaaaaatataattgaaataacaaaa 2536651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 10 - 61
Target Start/End: Original strand, 20433018 - 20433069
Alignment:
Q  10 aacaatataatattattatagaaaaatttatttaaagatgtaattggaataa 61  Q
    ||||||||||||||||||||| |||||||| |||| ||| ||||||||||||    
T  20433018 aacaatataatattattataggaaaatttacttaaggatataattggaataa 20433069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 23958823 - 23958778
Alignment:
Q  17 taatattattatagaaaaatttatttaaagatgtaattggaataat 62  Q
    |||||||||||||||||||||| ||||||| |||||||| ||||||    
T  23958823 taatattattatagaaaaatttgtttaaaggtgtaattgaaataat 23958778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 11734247 - 11734189
Alignment:
Q  8 ccaacaatataatattattatagaaaaatttatttaaagatgtaattggaataataaaa 66  Q
    |||||||||||| |||| ||||| ||||||||||||||| | ||| |||||| ||||||    
T  11734247 ccaacaatataacattaatataggaaaatttatttaaaggtataactggaattataaaa 11734189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 289 - 327
Target Start/End: Original strand, 20698120 - 20698158
Alignment:
Q  289 tattatgcattgttcataccaattgagctaaattcatga 327  Q
    ||||||||||||| |||||||| ||||||||||||||||    
T  20698120 tattatgcattgtccataccaactgagctaaattcatga 20698158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 319
Target Start/End: Original strand, 33938701 - 33938734
Alignment:
Q  286 atatattatgcattgttcataccaattgagctaa 319  Q
    ||||||||||||||||||||||||| ||||||||    
T  33938701 atatattatgcattgttcataccaactgagctaa 33938734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 34672631 - 34672688
Alignment:
Q  9 caacaatataatattattatagaaaaatttatttaaagatgtaattggaataataaaa 66  Q
    ||||||||||| |||| |||| |||||||||||||| | | |||||||||| ||||||    
T  34672631 caacaatataacattaatataaaaaaatttatttaagggtataattggaattataaaa 34672688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 3533250 - 3533191
Alignment:
Q  8 ccaacaatataatattattatagaaaaatttatttaaagatgtaattggaataataaaata 68  Q
    |||||||||||||||| |||||||||||||| ||||| | | |||||| | ||||||||||    
T  3533250 ccaacaatataatatt-ttatagaaaaatttgtttaagggtctaattgaagtaataaaata 3533191  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 282 - 322
Target Start/End: Complemental strand, 5008882 - 5008842
Alignment:
Q  282 ttatatatattatgcattgttcataccaattgagctaaatt 322  Q
    |||||||||||||||||||| | |||||| |||||||||||    
T  5008882 ttatatatattatgcattgtccttaccaactgagctaaatt 5008842  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 280 - 320
Target Start/End: Complemental strand, 6283981 - 6283941
Alignment:
Q  280 ctttatatatattatgcattgttcataccaattgagctaaa 320  Q
    ||||| |||||||||||||||||| || |||||||||||||    
T  6283981 ctttacatatattatgcattgttcttatcaattgagctaaa 6283941  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 8 - 44
Target Start/End: Original strand, 16260397 - 16260433
Alignment:
Q  8 ccaacaatataatattattatagaaaaatttatttaa 44  Q
    ||||||||||||||||||||||| ||||||| |||||    
T  16260397 ccaacaatataatattattataggaaaatttgtttaa 16260433  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 287 - 319
Target Start/End: Complemental strand, 29740520 - 29740488
Alignment:
Q  287 tatattatgcattgttcataccaattgagctaa 319  Q
    ||||||||||||||| |||||||||||||||||    
T  29740520 tatattatgcattgtccataccaattgagctaa 29740488  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 286 - 324
Target Start/End: Original strand, 12909188 - 12909226
Alignment:
Q  286 atatattatgcattgttcataccaattgagctaaattca 324  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  12909188 atatattatgcattgttcataccaactgagctaaattca 12909226  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 13 - 66
Target Start/End: Complemental strand, 28479565 - 28479512
Alignment:
Q  13 aatataatattattatagaaaaatttatttaaagatgtaattggaataataaaa 66  Q
    ||||||||||||||||| |||||||||||||||  | |||||||||||| ||||    
T  28479565 aatataatattattatataaaaatttatttaaatgtataattggaataacaaaa 28479512  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 285 - 319
Target Start/End: Original strand, 41939283 - 41939317
Alignment:
Q  285 tatatattatgcattgttcataccaattgagctaa 319  Q
    ||||||||||||||| |||||||||||||||||||    
T  41939283 tatatattatgcattattcataccaattgagctaa 41939317  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 319
Target Start/End: Complemental strand, 10199062 - 10199025
Alignment:
Q  282 ttatatatattatgcattgttcataccaattgagctaa 319  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  10199062 ttatatatattatgcattgtccataccaactgagctaa 10199025  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 319
Target Start/End: Original strand, 31602847 - 31602880
Alignment:
Q  286 atatattatgcattgttcataccaattgagctaa 319  Q
    ||||||||||||||||||||||||| ||||||||    
T  31602847 atatattatgcattgttcataccaactgagctaa 31602880  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 327
Target Start/End: Original strand, 37054287 - 37054332
Alignment:
Q  282 ttatatatattatgcattgttcataccaattgagctaaattcatga 327  Q
    |||||||||||||||||||| | |||||| ||||||||| ||||||    
T  37054287 ttatatatattatgcattgtccctaccaactgagctaaactcatga 37054332  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 66
Target Start/End: Original strand, 49758125 - 49758180
Alignment:
Q  11 acaatataatattattatagaaaaatttatttaaagatgtaattggaataataaaa 66  Q
    ||||||||||||||||||||||||| || ||||| | | |||||| ||||||||||    
T  49758125 acaatataatattattatagaaaaaattgtttaagggtataattgaaataataaaa 49758180  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 38
Target Start/End: Complemental strand, 31293106 - 31293076
Alignment:
Q  8 ccaacaatataatattattatagaaaaattt 38  Q
    |||||||||||||||||||||||||||||||    
T  31293106 ccaacaatataatattattatagaaaaattt 31293076  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 54
Target Start/End: Complemental strand, 34667009 - 34666963
Alignment:
Q  8 ccaacaatataatattattatagaaaaatttatttaaagatgtaatt 54  Q
    ||||||||||| ||||||||||||||||||| |||||| || |||||    
T  34667009 ccaacaatatactattattatagaaaaatttgtttaaaaatataatt 34666963  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 286 - 324
Target Start/End: Original strand, 43630440 - 43630478
Alignment:
Q  286 atatattatgcattgttcataccaattgagctaaattca 324  Q
    |||||||||||||||||||||||||||||| ||| ||||    
T  43630440 atatattatgcattgttcataccaattgagttaacttca 43630478  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 319
Target Start/End: Complemental strand, 10840457 - 10840424
Alignment:
Q  286 atatattatgcattgttcataccaattgagctaa 319  Q
    ||||||||||||||||||||||||| ||||||||    
T  10840457 atatattatgcattgttcataccaactgagctaa 10840424  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 315
Target Start/End: Original strand, 38559914 - 38559947
Alignment:
Q  282 ttatatatattatgcattgttcataccaattgag 315  Q
    ||||||||||||||||||||||||||||| ||||    
T  38559914 ttatatatattatgcattgttcataccaactgag 38559947  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 326
Target Start/End: Original strand, 38869539 - 38869580
Alignment:
Q  285 tatatattatgcattgttcataccaattgagctaaattcatg 326  Q
    ||||||||||||||||||| |||||| |||||||| ||||||    
T  38869539 tatatattatgcattgttcttaccaactgagctaagttcatg 38869580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 319
Target Start/End: Original strand, 43490439 - 43490472
Alignment:
Q  286 atatattatgcattgttcataccaattgagctaa 319  Q
    ||||||||||||||||||||||||| ||||||||    
T  43490439 atatattatgcattgttcataccaactgagctaa 43490472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 26976172 - 26976228
Alignment:
Q  9 caacaatataatattattatagaaaaatttatttaaagatgtaattggaataataaa 65  Q
    ||||||||||| |||| ||||||||||||| ||||||| | |||||| ||| |||||    
T  26976172 caacaatataacattaatatagaaaaatttctttaaaggtataattgaaattataaa 26976228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 22 - 58
Target Start/End: Complemental strand, 28370456 - 28370420
Alignment:
Q  22 ttattatagaaaaatttatttaaagatgtaattggaa 58  Q
    |||||||||||||| || |||||||||||||||||||    
T  28370456 ttattatagaaaaagttgtttaaagatgtaattggaa 28370420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 22 - 58
Target Start/End: Complemental strand, 28378278 - 28378242
Alignment:
Q  22 ttattatagaaaaatttatttaaagatgtaattggaa 58  Q
    |||||||||||||| || |||||||||||||||||||    
T  28378278 ttattatagaaaaagttgtttaaagatgtaattggaa 28378242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 22 - 58
Target Start/End: Complemental strand, 28386096 - 28386060
Alignment:
Q  22 ttattatagaaaaatttatttaaagatgtaattggaa 58  Q
    |||||||||||||| || |||||||||||||||||||    
T  28386096 ttattatagaaaaagttgtttaaagatgtaattggaa 28386060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0334 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0334
Description:

Target: scaffold0334; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 286 - 320
Target Start/End: Complemental strand, 5221 - 5187
Alignment:
Q  286 atatattatgcattgttcataccaattgagctaaa 320  Q
    |||||||||||||||| ||||||||||||||||||    
T  5221 atatattatgcattgtccataccaattgagctaaa 5187  T

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Target: scaffold0043 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 72139 - 72082
Alignment:
Q  9 caacaatataatattattatagaaaaatttatttaaagatgtaattggaataataaaa 66  Q
    |||||||| | ||||||||| ||||||||| ||||| ||| |||||||||||| ||||    
T  72139 caacaataaagtattattattgaaaaatttgtttaaggatataattggaataacaaaa 72082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 97044 - 96991
Alignment:
Q  8 ccaacaatataatattattatagaaaaatttatttaaagatgtaattggaataa 61  Q
    |||||||||||||||||||||| |||||||| ||||| | | |||||| |||||    
T  97044 ccaacaatataatattattataaaaaaatttgtttaagggtataattgaaataa 96991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 315
Target Start/End: Complemental strand, 122930 - 122901
Alignment:
Q  286 atatattatgcattgttcataccaattgag 315  Q
    ||||||||||||||||||||||||||||||    
T  122930 atatattatgcattgttcataccaattgag 122901  T

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Target: scaffold1017 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold1017
Description:

Target: scaffold1017; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 2084 - 2140
Alignment:
Q  10 aacaatataatattattatagaaaaatttatttaaagatgtaattggaataataaaa 66  Q
    |||||||||| |||||||||||||||| | ||||| | | |||||||||||| ||||    
T  2084 aacaatataacattattatagaaaaatatgtttaagggtataattggaataacaaaa 2140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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