View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0935_low_6 (Length: 442)

Name: NF0935_low_6
Description: NF0935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0935_low_6
NF0935_low_6
[»] chr3 (1 HSPs)
chr3 (15-344)||(55173351-55173680)
[»] chr4 (3 HSPs)
chr4 (79-228)||(27721147-27721296)
chr4 (295-339)||(27721586-27721630)
chr4 (25-74)||(27720986-27721035)
[»] chr2 (1 HSPs)
chr2 (175-228)||(42989290-42989343)


Alignment Details
Target: chr3 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 15 - 344
Target Start/End: Complemental strand, 55173680 - 55173351
Alignment:
Q  15 tatccaaatgatgaaagatgagaagctctttgctccccaaggaggccccatcatcttggcacaaattgaaaatgagtacaaccatattcaacttgcttat 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55173680 tatccaaatgatgaaagatgagaagctctttgctccccaaggaggccccatcatcttggcacaaattgaaaatgagtacaaccatattcaacttgcttat 55173581  T
Q  115 gaagagaagggagatagttatgttcagtgggccgcaaatatggcagtggccttggacataggagttccgtggatcatgtgcaagcagaaggatgctcccg 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  55173580 gaagagaagggagatagttatgttcagtgggccgcaaatatggcagtggccttggacatcggagttccgtggatcatgtgcaagcagaaggatgctcccg 55173481  T
Q  215 atcccgtcgtaagtaattaattttaggcataaaacaaagtgaggacagtcatgatgtgatcatgagtttaataattttatttggcagatcaatgcatgca 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55173480 atcccgtcgtaagtaattaattttaggcataaaacaaagtgaggacagtcatgatgtgatcatgagtttaataattttatttggcagatcaatgcatgca 55173381  T
Q  315 atggaagacattgtggtgataccttctcag 344  Q
    ||||||||||||||||||||||||||||||    
T  55173380 atggaagacattgtggtgataccttctcag 55173351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 7e-22; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 79 - 228
Target Start/End: Original strand, 27721147 - 27721296
Alignment:
Q  79 attgaaaatgagtacaaccatattcaacttgcttatgaagagaagggagatagttatgttcagtgggccgcaaatatggcagtggccttggacataggag 178  Q
    ||||| |||||||||||||| || ||||||||||||||||   | ||||||| ||||||||||||||| ||||| ||||||||  |  |  | |  ||||    
T  27721147 attgagaatgagtacaaccacatccaacttgcttatgaagctgatggagataattatgttcagtgggctgcaaaaatggcagtttcactatataatggag 27721246  T
Q  179 ttccgtggatcatgtgcaagcagaaggatgctcccgatcccgtcgtaagt 228  Q
    |||| ||| ||||||||||||||||||||||||| ||||| || ||||||    
T  27721247 ttccatgggtcatgtgcaagcagaaggatgctcctgatccagttgtaagt 27721296  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 295 - 339
Target Start/End: Original strand, 27721586 - 27721630
Alignment:
Q  295 ttggcagatcaatgcatgcaatggaagacattgtggtgatacctt 339  Q
    ||||||||| ||||||||||||||||| || ||||||||||||||    
T  27721586 ttggcagattaatgcatgcaatggaaggcactgtggtgatacctt 27721630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 27720986 - 27721035
Alignment:
Q  25 atgaaagatgagaagctctttgctccccaaggaggccccatcatcttggc 74  Q
    |||||||| || || ||||||||||| ||||||||||| |||||||||||    
T  27720986 atgaaagaagaaaaactctttgctcctcaaggaggccctatcatcttggc 27721035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 175 - 228
Target Start/End: Complemental strand, 42989343 - 42989290
Alignment:
Q  175 ggagttccgtggatcatgtgcaagcagaaggatgctcccgatcccgtcgtaagt 228  Q
    ||||||||||||||||||||||||||  | |||||||| ||||| || ||||||    
T  42989343 ggagttccgtggatcatgtgcaagcaagatgatgctcctgatcctgttgtaagt 42989290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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