View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0935_low_9 (Length: 366)
Name: NF0935_low_9
Description: NF0935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0935_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 98 - 293
Target Start/End: Complemental strand, 27562149 - 27561954
Alignment:
| Q |
98 |
attttgtcattatttcttgagtaaatgagatgcatttactctagggttccatgtaaaagtatcttttcatgtatgtttatttccagaatgaactaaatga |
197 |
Q |
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| T |
27562149 |
attttgtcattatttcttgagtaaatgagatgcatttactctagggttccatgtaaaagtatcttttcatgtatgtttatttccagaatgaactaaatga |
27562050 |
T |
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| Q |
198 |
tgataatatgtacacacttcccgagtatactctatggcaaatgatcaacttccacattggatcgctgaattggatagatataaatcattaacagtg |
293 |
Q |
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| T |
27562049 |
tgataatatgtacacacttcccgagtatactctatggaaaatgatcaacttcaacattggatcgctgaattggatagatataaatcattaacagtg |
27561954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 99 - 291
Target Start/End: Complemental strand, 36669202 - 36669011
Alignment:
| Q |
99 |
ttttgtcattatttcttgagtaaatgagatgcatttactctagggttccatgtaaaagtatcttttcatgtatgtttatttccagaatgaactaaatgat |
198 |
Q |
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| T |
36669202 |
ttttgtcattatttcttcagtaattgagatgcattgactc-agggttccatctaaaagtatcttttcatgtatgtttatt-ccagaatgaactaaatgat |
36669105 |
T |
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| Q |
199 |
gataa-tatgtacacacttcccgagtatactctatggcaaatgatcaacttccacattggatcgctgaattggatagatataaatcattaacag |
291 |
Q |
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| T |
36669104 |
gataagtatgtacgcacttcccgagtatactctttggcaaaggatcaacttcaacattggattgctgaattggatagatttaaatcattgacag |
36669011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 99; Significance: 8e-49; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 104 - 286
Target Start/End: Complemental strand, 29411682 - 29411503
Alignment:
| Q |
104 |
tcattatttcttgagtaaatgagatgcatttactctagggttccatgtaaaagtatcttttcatgtatgtttatttccagaatgaactaaatgatgataa |
203 |
Q |
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| T |
29411682 |
tcattatttcttgagtaattgaaacacattcattatagggttccatgtaaaagtatcttttc----gtgtttatttccagaatgaactaaatgatgataa |
29411587 |
T |
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| Q |
204 |
-tatgtacacacttcccgagtatactctatggcaaatgatcaacttccacattggatcgctgaattggatagatataaatcatt |
286 |
Q |
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| T |
29411586 |
gtatgtacgcaattcccgagtatactctttggcaaatgatcaacttcaacactggattgctgaattggacagatataaatcatt |
29411503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 99 - 176
Target Start/End: Complemental strand, 26928698 - 26928621
Alignment:
| Q |
99 |
ttttgtcattatttcttgagtaaatgagatgcatttactctagggttccatgtaaaagtatcttttcatgtatgttta |
176 |
Q |
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||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||| |||| |||| |||||| |
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| T |
26928698 |
ttttgtcattatttcttgagtaatttagatgcatatactctagggttccatgtaaaagtatatttttatgtgtgttta |
26928621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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