View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0936_high_2 (Length: 594)
Name: NF0936_high_2
Description: NF0936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0936_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 468; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 17 - 584
Target Start/End: Complemental strand, 38625438 - 38624882
Alignment:
| Q |
17 |
acccccaacaaatccttcacttgactgggcaacaannnnnnnagctagttgccaaatttgtgtctccatattcttcatagatgtttcattatgtctttga |
116 |
Q |
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| T |
38625438 |
acccccaacaaatcctccacttgactgggcaacaatttttttagctagttgccaaatttgtgtctccatattcttcatagatgtttcattatgtctttga |
38625339 |
T |
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| Q |
117 |
acaacttcatgatttgctttgatttcttggaagttattctgggtgaccttgaaaaaactagtcaatgattcttcaagtgttgaaagtttcttttgttgtt |
216 |
Q |
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| T |
38625338 |
acaacttcatgatttgctttgatttcttggaagttattctgggtgaccttgaaaaaactagtcaatgattcttcaagtgttgaaggtttcttttgttgtt |
38625239 |
T |
|
| Q |
217 |
gaggttgaggagggggaataagcgagttcaaggtgttgttgtttgagtatttgaggatataatgttgtgcccacacatgattgtaggtgttgaagtaaac |
316 |
Q |
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| T |
38625238 |
gaggttgaggagggggaataagcgagttcaaggtgttgttgtttgagtatttgaggatataatgttgtgcccacacatgatcgtaggtgttgaagtaaac |
38625139 |
T |
|
| Q |
317 |
gttcactttttggtaattcccaatataattcacttcttcacttcttcacttgctcccttgggtacacctcaccatttgcatgtccctcaccacaaaaatc |
416 |
Q |
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| T |
38625138 |
gttcactttttggtaattcccaatataattcacttcttc--------acttgctcccttgggtacacctcaccatttgcatgtccctcaccacaaaaatc |
38625047 |
T |
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| Q |
417 |
gcaccttaaagtttgtgcttgttgaacctgttgaacttgcgcttgttgggcttgaacttgtcccatactcatggctattacttgtttggtatgtgctcta |
516 |
Q |
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| T |
38625046 |
gcaccttaaagtttgtgcttgttgaacctgttgaacttgcgcttgctgggcttgtatttgtcccatactcatggcttttacttgtttggtatgtgctcta |
38624947 |
T |
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| Q |
517 |
atttgttactcattaaggtttgattggccagcatatcactattctcattcaccctaaacactcctttg |
584 |
Q |
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| T |
38624946 |
atttgttactcattaaggtttgattgaccaacatatcac---tctcattcaccctaaacactcctttg |
38624882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 221 - 290
Target Start/End: Complemental strand, 28250562 - 28250493
Alignment:
| Q |
221 |
ttgaggagggggaataagcgagttcaaggtgttgttgtttgagtatttgaggatataatgttgtgcccac |
290 |
Q |
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| T |
28250562 |
ttgaggagagggaataagtgtattcaaggtgttgttgtttaagtatttgaggataggatgttgtgcccac |
28250493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 369 - 455
Target Start/End: Original strand, 21021502 - 21021589
Alignment:
| Q |
369 |
ctcccttgggtacac-ctcaccatttgcatgtccctcaccacaaaaatcgcaccttaaagtttgtgcttgttgaacctgttgaacttg |
455 |
Q |
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| T |
21021502 |
ctccctcgggtacacactcaccattagcatgtccttcaccacaaaattcgcacctcaaaacttgtggttggtgaatctgttgaacttg |
21021589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 206 - 287
Target Start/End: Original strand, 12815395 - 12815476
Alignment:
| Q |
206 |
cttttgttgttgaggttgaggagggggaataagcgagttcaaggtgttgttgtttgagtatttgaggatataatgttgtgcc |
287 |
Q |
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|||||||||||||||||| ||||| ||||| || | ||| ||||||||||| |||||||| |||||| || |||||||||| |
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| T |
12815395 |
cttttgttgttgaggttgcggaggtggaatgagtgggtttaaggtgttgttatttgagtacttgaggttaggatgttgtgcc |
12815476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 369 - 492
Target Start/End: Original strand, 17843365 - 17843490
Alignment:
| Q |
369 |
ctcccttgggtacacct-caccatttgcatgtccctcaccacaaaaatcgcaccttaaagtttgtgcttgttgaacctgttgaacttgcgcttgttgggc |
467 |
Q |
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| T |
17843365 |
ctccctcgggtacacattcaccattagcatgtccttcaccacaaaactcgcatctcaaaacttgtgtttgttgaatctgttgaacttaagtttgttgaac |
17843464 |
T |
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| Q |
468 |
ttgaac-ttgtcccatactcatggct |
492 |
Q |
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| T |
17843465 |
ttgaactttgtctcatacttatggct |
17843490 |
T |
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