View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0936_high_20 (Length: 259)
Name: NF0936_high_20
Description: NF0936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0936_high_20 |
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Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 7 - 234
Target Start/End: Original strand, 4654457 - 4654684
Alignment:
| Q |
7 |
gtaatcagggttgtatgagtaagcaattagagggaacaatagcaaaaagagagatagtatgctcatttttgtgtaaattgttttgtttatggagtttgcc |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
4654457 |
gtaatcagggttgtatgagtaagcaattagagggaacaatagcaaaaagagagatagtatgctcatttttgtgtaaatgtttttgtttatggagtttgcc |
4654556 |
T |
|
| Q |
107 |
atatctgtgtgagaagagtgtgaagaaaatagattaatatgaatgatacgtagaagttgctttatttattattatcttatacattgagtaggaagggaaa |
206 |
Q |
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|||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4654557 |
atatctgtgtgagaagagtgtgaagaaaatagatcaatttgaatggtacgtagaagttgctttatttattattatcttatacattgagtaggaagggaaa |
4654656 |
T |
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| Q |
207 |
tttccataaaacagcacttgagactgat |
234 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
4654657 |
tttccataaaacagcacttgagactgat |
4654684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 7 - 234
Target Start/End: Original strand, 4637815 - 4638051
Alignment:
| Q |
7 |
gtaatcagggttgtatgagtaagcaattagagggaacaatagcaaaaagagagatagtatgctcatttttgtgtaaattgttttgtttatggagtttgcc |
106 |
Q |
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|||||||||||||||||||| ||||| || |||||| | |||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||| |
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| T |
4637815 |
gtaatcagggttgtatgagttagcaactaaagggaaaagtagcaaaaagagggatagtatgctgatttttgtgtaaatgtttttgtttatggagtttgcc |
4637914 |
T |
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| Q |
107 |
atatctgtgtgagaagagtgtgaagaaaatagattaatatgaatgatacgtagaagttgc-tttatttattattat---ctt--atacattga---gtag |
197 |
Q |
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||| |||||||||||||| |||||||| ||| |||||| |||||| |||||||||||||| ||||||||||||||| || ||||||||| |||| |
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| T |
4637915 |
atagctgtgtgagaagagagtgaagaagatacattaatttgaatggtacgtagaagttgcatttatttattattattagattagatacattgagaggtag |
4638014 |
T |
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| Q |
198 |
gaagggaaatttccataaaacagcacttgagactgat |
234 |
Q |
| |
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||| ||||||| |||||||||| ||||||||| |||| |
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| T |
4638015 |
gaaaggaaattcccataaaacaacacttgagagtgat |
4638051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 17 - 234
Target Start/End: Original strand, 4644663 - 4644889
Alignment:
| Q |
17 |
ttgtatgagtaagcaattagagggaacaatagcaaaaagagagatagtatgctcatttttgtgtaaattgttttgtttatggagtttgccatatctgtgt |
116 |
Q |
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||||||||| ||| | ||||||||||| |||||||| |||||| |||||||| |||||||||||| || |||||||||||| |||||||||| ||||| |
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| T |
4644663 |
ttgtatgaggtagctagtagagggaacagtagcaaaatgagagaaagtatgctgatttttgtgtaattttttttgtttatggtgtttgccatagttgtgt |
4644762 |
T |
|
| Q |
117 |
gagaagagtgtgaagaaaatagattaatatgaatgatacgtagaagttgc-tttatttattatt-----atcttatacattga---gtaggaagggaaat |
207 |
Q |
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|||||||| |||||||| ||| |||||| |||||| |||||||||||||| ||||||||||||| || | ||||||| | |||||||||||||| |
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| T |
4644763 |
gagaagagagtgaagaagatacattaatttgaatggtacgtagaagttgcatttatttattattattagatttgatacatttagaggtaggaagggaaat |
4644862 |
T |
|
| Q |
208 |
ttccataaaacagcacttgagactgat |
234 |
Q |
| |
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|||||||||||| |||||||||||||| |
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| T |
4644863 |
ttccataaaacaacacttgagactgat |
4644889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 17 - 133
Target Start/End: Original strand, 4673677 - 4673793
Alignment:
| Q |
17 |
ttgtatgagtaagcaattagagggaacaatagcaaaaagagagatagtatgctcatttttgtgtaaattgttttgtttatggagtttgccatatctgtgt |
116 |
Q |
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||||||||| ||||| |||||||||||| ||||||| ||| | ||||| | | |||||||||||| || ||||||||||||||||||||||| |||||| |
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| T |
4673677 |
ttgtatgaggtagcaactagagggaacaagagcaaaatgagcggtagtagggtgatttttgtgtaattttttttgtttatggagtttgccatagctgtgt |
4673776 |
T |
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| Q |
117 |
gagaagagtgtgaagaa |
133 |
Q |
| |
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|||||||| |||||||| |
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| T |
4673777 |
gagaagagggtgaagaa |
4673793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 7 - 109
Target Start/End: Complemental strand, 4711218 - 4711116
Alignment:
| Q |
7 |
gtaatcagggttgtatgagtaagcaattagagggaacaatagcaaaaagagagatagtatgctcatttttgtgtaaattgttttgtttatggagtttgcc |
106 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||||||| |||||| |||||||||||| | | ||||| |||| || | ||| |||||||||||||||| |
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| T |
4711218 |
gtaatcagggttgtatgagttagcaactagagggaacaagagcaaatagagagatagtagggtaattttagtgtgaaatttttcgtttatggagtttgcc |
4711119 |
T |
|
| Q |
107 |
ata |
109 |
Q |
| |
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||| |
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| T |
4711118 |
ata |
4711116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 14 - 77
Target Start/End: Original strand, 4663664 - 4663727
Alignment:
| Q |
14 |
gggttgtatgagtaagcaattagagggaacaatagcaaaaagagagatagtatgctcatttttg |
77 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||| |
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| T |
4663664 |
gggttgtatgaggtagcaattagagggaacaatagcaaaatgagagatagtatgctgatttttg |
4663727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 109
Target Start/End: Complemental strand, 4696309 - 4696213
Alignment:
| Q |
13 |
agggttgtatgagtaagcaattagagggaacaatagcaaaaagagagatagtatgctcatttttgtgtaaattgttttgtttatggagtttgccata |
109 |
Q |
| |
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||||| ||||||| ||||| |||||||||||||||||||| ||||||||| | | | ||||| |||| || | |||||||| |||||||||||||| |
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| T |
4696309 |
agggtcgtatgaggtagcaactagagggaacaatagcaaaatgagagatagcaggatgattttagtgtgaaattttttgtttctggagtttgccata |
4696213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 109
Target Start/End: Complemental strand, 4845146 - 4845044
Alignment:
| Q |
7 |
gtaatcagggttgtatgagtaagcaattagagggaacaatagcaaaaagagagatagtatgctcatttttgtgtaaattgttttgtttatggagtttgcc |
106 |
Q |
| |
|
|||||||||||||||||||| | || |||||||||||| | |||| ||| |||||||| | | ||||| |||| || | |||||||||||||||||| | |
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| T |
4845146 |
gtaatcagggttgtatgagttaataactagagggaacaaaaccaaatagatagatagtagggtgattttagtgtgaaattttttgtttatggagtttggc |
4845047 |
T |
|
| Q |
107 |
ata |
109 |
Q |
| |
|
||| |
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| T |
4845046 |
ata |
4845044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 44 - 133
Target Start/End: Original strand, 4864926 - 4865015
Alignment:
| Q |
44 |
aatagcaaaaagagagatagtatgctcatttttgtgtaaattgttttgtttatggagtttgccatatctgtgtgagaagagtgtgaagaa |
133 |
Q |
| |
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||||| |||| ||||||||||| | | ||||| ||||||| | | |||||||| |||||||||||| ||||||||||||| |||||||| |
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| T |
4864926 |
aataggaaaaggagagatagtagggtgattttagtgtaaagtttcttgtttatcgagtttgccatagttgtgtgagaagagggtgaagaa |
4865015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 153 - 234
Target Start/End: Original strand, 4673828 - 4673913
Alignment:
| Q |
153 |
tacgtagaagttgc-tttatttattattatcttatacattgag---taggaagggaaatttccataaaacagcacttgagactgat |
234 |
Q |
| |
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|||||||||||||| |||| |||||||||| ||||||||||| |||||||||| |||| |||||| | |||||||||||||| |
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| T |
4673828 |
tacgtagaagttgcctttaattattattattatatacattgagaggtaggaagggagatttttataaaaaaacacttgagactgat |
4673913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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