View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0936_low_11 (Length: 436)
Name: NF0936_low_11
Description: NF0936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0936_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 29 - 426
Target Start/End: Complemental strand, 6037506 - 6037109
Alignment:
| Q |
29 |
atgttcaactagttctgattcttacatttttggctttaatcagaatacgaaacaacaataaagtacattcataaaaattcaagtaactttggtacttgat |
128 |
Q |
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| T |
6037506 |
atgttcaaccagttctgattcttacatttctggctttaatcagaatacgagaaaacaataaagtacattcataaaaattcaagtaactttggtacttgat |
6037407 |
T |
|
| Q |
129 |
agtattttacgatacaaccatgattcagatggtgacttaggcagtggtggaagtaacacagctttacgacagagaccgaaaggccatccttcacaatgac |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6037406 |
agtattttacgatacaaccatgattcagatggtgacttaggcagtggtggaagtaacacagctttacgacagagaccgaaaggccatccttcacaatgac |
6037307 |
T |
|
| Q |
229 |
aaaactcctgaattatagaacgcttccaatattccgacaaatcaaactcattcaagcttgaacatcttgaaaggttagtcttcacagaataaaatccttc |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6037306 |
aaaactcctgaattatagaacgcttccaatattccgacaaatcaaactcattcaagcttgaacatcttgaaaggttagtcttcacagaataaaatccttc |
6037207 |
T |
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| Q |
329 |
cccatttgcactagaagaatacattgagaaacagctcttaactgacaaaaattcttctttttcaccttgttcttcattacctccctcctttgcctttg |
426 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6037206 |
cccatttgcacttgaagaatacattgagaaacagctcttaactgacaaaaattcttctttttcaccttgttcttcattacctccctcctttgcctttg |
6037109 |
T |
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