View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0936_low_12 (Length: 395)
Name: NF0936_low_12
Description: NF0936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0936_low_12 |
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| [»] chr5 (2 HSPs) |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 376; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 16 - 395
Target Start/End: Complemental strand, 16804060 - 16803681
Alignment:
| Q |
16 |
atgaagcattccaccaattgtgttcattatcttaaccatgtgttttcttttcccccaaataaggtgccaaatattgttgtatcaccgtttatgggtgatg |
115 |
Q |
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| T |
16804060 |
atgaagcattccaccaatcgtgttcattatcttaaccatgtgttttcttttcccccaaataaggtgccaaatattgttgtatcaccgtttatgggtgatg |
16803961 |
T |
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| Q |
116 |
gttatataataagttttttaattggtaccccaccatttcaactttacggtgttatggatacggccaatgataatatttggtttcaatgtaatccgtgtaa |
215 |
Q |
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| T |
16803960 |
gttatataataagttttttaattggtaccccaccatttcaactttacggtgttatggatacggccaatgataatatttggtttcaatgtaatccgtgtaa |
16803861 |
T |
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| Q |
216 |
accatgtttcaacacaacatcaccaatgtttgacccttcaaaatcttcaacctataaaaccattccttgctcttctcccaaatgcaaaaatgtagaaaat |
315 |
Q |
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| T |
16803860 |
accatgtttcaacacaacatcaccaatgtttgacccttcaaaatcttcaacctataaaaccattccttgctcttctcccaaatgcaaaaatgtagaaaat |
16803761 |
T |
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| Q |
316 |
acgcattgctcttccgatgataaaaaggtatgtgaatatagttttacatatggtggtgaggcatattcccaaggagatct |
395 |
Q |
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| T |
16803760 |
acgcattgctcttccgatgataaaaaggtatgtgaatatagttttacatatggtggtgaggcatattcccaaggagatct |
16803681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 35 - 370
Target Start/End: Original strand, 19573208 - 19573540
Alignment:
| Q |
35 |
gtgttcattatcttaaccatgtgttttcttttcccccaaataaggtgccaaatattgttgtatcaccgtttatgggtgatggttatataataagtttttt |
134 |
Q |
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| T |
19573208 |
gtgttcgttatctcaaccatgtgttttctttttccccaaataaaattcaagatgtgcctttatcatcatttatgggtgctggatatgtaatgagttattc |
19573307 |
T |
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| Q |
135 |
aattggtaccccaccatttcaactttacggtgttatggatacggccaatgataatatttggtttcaatgtaatccgtgtaaaccatgtttcaacacaaca |
234 |
Q |
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| T |
19573308 |
aattggtacccctccatttcaactttacagtcttattgatacaggaaatgataacatttggtttcaatgtaagccgtgcaaaccatgtttaaaccaaaca |
19573407 |
T |
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| Q |
235 |
tcaccaatgtttgacccttcaaaatcttcaacctataaaaccattccttgctcttctcccaaatgcaaaaatgtagaaaatacgcattgctcttccgatg |
334 |
Q |
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| T |
19573408 |
tcaccaatgtttcacccttcaaaatcatcaacctacaaaaccattccatgcacttctcccatatgcaaaaatgcag---atgggcattgctcttccaaag |
19573504 |
T |
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| Q |
335 |
ataaaaaggtatgtgaatatagttttacatatggtg |
370 |
Q |
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| T |
19573505 |
attaaaagatatgtgaatataaatatacatatggtg |
19573540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 139 - 340
Target Start/End: Complemental strand, 15622 - 15421
Alignment:
| Q |
139 |
ggtaccccaccatttcaactttacggtgttatggatacggccaatgataatatttggtttcaatgtaatccgtgtaaaccatgtttcaacacaacatcac |
238 |
Q |
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||||| |||||||| || ||||| |||| ||||||||| | | |||| ||||||||||||||||| ||||||||||||||||| ||| |||||| | |
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| T |
15622 |
ggtactccaccattccagctttatggtgctatggatacaggtagtgatggaatttggtttcaatgtaagccgtgtaaaccatgtttaaaccaaacatctc |
15523 |
T |
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| Q |
239 |
caatgtttgacccttcaaaatcttcaacctataaaaccattccttgctcttctcccaaatgcaaaaatgtagaaaatacgcattgctcttccgatgataa |
338 |
Q |
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| T |
15522 |
caatgtttaacccttcaaaatcttcaacctataaaaacattcattgctcttctcccacatgtaaacgtttcgaaaatagccattgctcttccaatcataa |
15423 |
T |
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| Q |
339 |
aa |
340 |
Q |
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|| |
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| T |
15422 |
aa |
15421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 135 - 293
Target Start/End: Original strand, 8894073 - 8894231
Alignment:
| Q |
135 |
aattggtaccccaccatttcaactttacggtgttatggatacggccaatgataatatttggtttcaatgtaatccgtgtaaaccatgtttcaacacaaca |
234 |
Q |
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|||||||||||| |||||||| ||||| |||||| ||||||| | || ||| || |||||||||||||| || |||||||||||||| ||| |||| |
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| T |
8894073 |
aattggtacccctccatttcagctttatggtgttgtggatacaggcagtgacggaatatggtttcaatgtaagccttgtaaaccatgtttaaaccaaaca |
8894172 |
T |
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| Q |
235 |
tcaccaatgtttgacccttcaaaatcttcaacctataaaaccattccttgctcttctcc |
293 |
Q |
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| T |
8894173 |
tctccgatatttaacccttcaaaatcatcaacctacaaaaacatccgttgctcttctcc |
8894231 |
T |
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