View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0936_low_13 (Length: 384)
Name: NF0936_low_13
Description: NF0936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0936_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 30 - 319
Target Start/End: Original strand, 19478511 - 19478800
Alignment:
| Q |
30 |
agttaatgaagcttgaagctaactaaacatgtattttgttatgtagataataggaaaggacttgtttaaatgtctaaaggaaaaattgggggcaaatttt |
129 |
Q |
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| T |
19478511 |
agttaatgaagcttgaagctaactaaatatgtattttgttatgtagataataggaaaggacttgtttaaatgtctaaaggaaaaattgggggcaaatttt |
19478610 |
T |
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| Q |
130 |
actacatttctttcggaaaagttgactctagtacctggggacatttctcttgaaaacttgggattggaagattctattctaaaagaagaaattcacaatc |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
19478611 |
actacatttctttcggaaaagttgactctagtacctggggacatttctcttgaagacttgggattggaagattctattctaaaggaagaaattcacaatc |
19478710 |
T |
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| Q |
230 |
aaatagatgttattgttaatttagctgcaaatacaaactttgatgaaaggtactaaaaatatcaggcttttattactctaccaaagtaga |
319 |
Q |
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| T |
19478711 |
aaatagatgttattgttaatttagctgcaaatacaaactttgatgaaaggtactaaaaatatcaggcttttattactctaccaaagtaga |
19478800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 282
Target Start/End: Complemental strand, 36198052 - 36197998
Alignment:
| Q |
228 |
tcaaatagatgttattgttaatttagctgcaaatacaaactttgatgaaaggtac |
282 |
Q |
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| T |
36198052 |
tcaaacagatgttattattaatttggctgcaactactaattttgatgaaaggtac |
36197998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 113
Target Start/End: Complemental strand, 36186406 - 36186362
Alignment:
| Q |
69 |
tatgtagataataggaaaggacttgtttaaatgtctaaaggaaaa |
113 |
Q |
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| T |
36186406 |
tatgtagataatagggaaggacttgtttaaattgctgaaggaaaa |
36186362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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