View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0936_low_16 (Length: 357)
Name: NF0936_low_16
Description: NF0936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0936_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 24 - 346
Target Start/End: Complemental strand, 14166317 - 14166006
Alignment:
| Q |
24 |
aagaggaatgagtttttcccttctcttgatggagcttgtgcttaatagtttaatcaagacttaaagttgtgatgttttggtttatcttgttggatgtggt |
123 |
Q |
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| T |
14166317 |
aagaggaatgagtttttcccttctcttgatggagcttgtgcttaatagtttaatcaagacttaaagttgtgatgttttggtttatcttgttgaatgtggt |
14166218 |
T |
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| Q |
124 |
tttagtttttctttcattatgagaacttaaaagtactattttattatatggttgatggtatgtttgatggttcattttgacttgaaaactttatttgaag |
223 |
Q |
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| T |
14166217 |
tttagtttttctttcattatgagaacttaaaagt----------tatatagttgatggtatgtttgatggttcattttgacttgaaaactttatttgaag |
14166128 |
T |
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| Q |
224 |
tttcaaacattatcaataatacatgatgaacaagctcaaaaataaaacaatttcgtagaaatgttaattgttagattaagattaaggatttcgtgctctg |
323 |
Q |
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| T |
14166127 |
tttcaaacattatcaataatacatgatgaacaagctcaaaaataaaacaatgtcgtagacatgttaattgttaga-taagattaaggatttcgtgctctg |
14166029 |
T |
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| Q |
324 |
tcaaatttcagaatatggttcat |
346 |
Q |
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| T |
14166028 |
ttaaattttagaatatagttcat |
14166006 |
T |
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