View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0936_low_21 (Length: 301)

Name: NF0936_low_21
Description: NF0936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0936_low_21
NF0936_low_21
[»] chr4 (13 HSPs)
chr4 (7-301)||(20513666-20513959)
chr4 (26-200)||(55081044-55081218)
chr4 (7-184)||(33722266-33722444)
chr4 (7-200)||(16595311-16595504)
chr4 (51-180)||(7216590-7216719)
chr4 (19-183)||(2574697-2574861)
chr4 (7-88)||(39991383-39991466)
chr4 (4-88)||(40684317-40684401)
chr4 (7-50)||(3388682-3388725)
chr4 (12-67)||(15017490-15017545)
chr4 (74-172)||(10566771-10566869)
chr4 (7-48)||(12613710-12613751)
chr4 (217-250)||(33722205-33722238)
[»] chr1 (13 HSPs)
chr1 (7-197)||(36725267-36725457)
chr1 (7-200)||(33380271-33380464)
chr1 (19-200)||(12906713-12906894)
chr1 (19-200)||(28857403-28857584)
chr1 (12-200)||(24159157-24159345)
chr1 (14-119)||(19309033-19309138)
chr1 (7-200)||(31064515-31064708)
chr1 (7-136)||(23191428-23191557)
chr1 (7-130)||(2493234-2493357)
chr1 (104-200)||(19308914-19309010)
chr1 (7-90)||(27761296-27761376)
chr1 (19-87)||(32987785-32987853)
chr1 (38-90)||(9252899-9252951)
[»] chr7 (5 HSPs)
chr7 (7-200)||(6897744-6897937)
chr7 (7-87)||(29477713-29477793)
chr7 (31-128)||(4333196-4333293)
chr7 (31-128)||(4337443-4337540)
chr7 (6-103)||(25831792-25831889)
[»] chr2 (3 HSPs)
chr2 (12-200)||(14105148-14105336)
chr2 (6-158)||(13059867-13060018)
chr2 (7-196)||(44956894-44957083)
[»] chr3 (7 HSPs)
chr3 (7-200)||(48431647-48431838)
chr3 (7-198)||(48435232-48435422)
chr3 (7-175)||(16983521-16983689)
chr3 (19-200)||(4662736-4662917)
chr3 (7-50)||(26386205-26386248)
chr3 (6-50)||(16815348-16815392)
chr3 (6-50)||(17934596-17934640)
[»] chr8 (7 HSPs)
chr8 (7-200)||(19950378-19950571)
chr8 (7-200)||(19954832-19955025)
chr8 (7-154)||(2470536-2470683)
chr8 (12-180)||(7146380-7146550)
chr8 (7-118)||(21640587-21640696)
chr8 (7-67)||(4543770-4543830)
chr8 (7-147)||(30779410-30779545)
[»] scaffold0018 (1 HSPs)
scaffold0018 (7-177)||(171080-171250)
[»] chr6 (8 HSPs)
chr6 (12-136)||(32814477-32814601)
chr6 (25-180)||(35130203-35130357)
chr6 (7-183)||(14042203-14042382)
chr6 (26-136)||(14776121-14776231)
chr6 (12-87)||(29610434-29610511)
chr6 (139-200)||(29610129-29610190)
chr6 (139-200)||(18038839-18038900)
chr6 (7-48)||(18909612-18909653)
[»] chr5 (2 HSPs)
chr5 (19-118)||(18264931-18265028)
chr5 (19-180)||(15591164-15591325)
[»] scaffold0028 (1 HSPs)
scaffold0028 (7-50)||(66336-66379)
[»] scaffold0586 (1 HSPs)
scaffold0586 (7-100)||(5228-5321)


Alignment Details
Target: chr4 (Bit Score: 178; Significance: 5e-96; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 7 - 301
Target Start/End: Original strand, 20513666 - 20513959
Alignment:
Q  7 ggagcagagaggaaagttatttgacaactcaagagaatttttggggtgagtagaagtgagggagatgagctcaatttataggtgttgagccaaagataag 106  Q
    |||| |||||| |||||| |||||||||||||||||| ||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  20513666 ggagaagagagaaaagttttttgacaactcaagagaacttttgagttgagtaaaagtgagggagatgagctcaatttataggtgttgagccaaagataag 20513765  T
Q  107 ttgcaaatccaatggctaggattaattgacatttagaaaatcaatgacttgatctcacattataaatgagcactaattaagaaagttgacatgannnnnn 206  Q
    ||||||||||||||| ||| |||| |||||  |||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||          
T  20513766 ttgcaaatccaatggttagaattagttgaccgttagaaaatcaatgacttgaactcgcattataaatgagcactaattaaaaaagttgacatga-ttttt 20513864  T
Q  207 nnnnnnnnnnaattcacaccttaacactccttgtgctccaacaacaactttgtgtgattcaaaatgatccataccggatgattgacttctgtgct 301  Q
              ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20513865 tattttttttaattcacaccttaacactccttgtgttccaacaacaactttgtgtgattcaaaatgatccataccggatgattgacttctgtgct 20513959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 26 - 200
Target Start/End: Complemental strand, 55081218 - 55081044
Alignment:
Q  26 tttgacaactcaagagaatttttggggtgagtagaagtgagggagatgagctcaatttataggtgttgagccaaagataagttgcaaatccaatggctag 125  Q
    |||||||||||||||||| |||| | |||||||||||||||||||| ||||||||||||||||||  |||||||||||||||| ||||||||||||||||    
T  55081218 tttgacaactcaagagaacttttagtgtgagtagaagtgagggagaggagctcaatttataggtgaagagccaaagataagttacaaatccaatggctag 55081119  T
Q  126 gattaattgacatttagaaaatcaatgacttgatctcacattataaatgagcactaattaagaaagttgacatga 200  Q
    |||||| ||||  |||||||||||||| ||| ||||||| | ||||||||||||||||| |||||||||||||||    
T  55081118 gattaaatgaccgttagaaaatcaatggctttatctcacctcataaatgagcactaattgagaaagttgacatga 55081044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 7 - 184
Target Start/End: Complemental strand, 33722444 - 33722266
Alignment:
Q  7 ggagcagagaggaaagttatttgacaactcaagagaa-tttttggggtgagtagaagtgagggagatgagctcaatttataggtgttgagccaaagataa 105  Q
    |||| |||||| |||||| ||||||||||||| |||| |||||||| ||||||||||||||||||| ||||||||||||||||||  |||||||||||||    
T  33722444 ggagaagagagaaaagttctttgacaactcaaaagaactttttgggatgagtagaagtgagggagaggagctcaatttataggtgaagagccaaagataa 33722345  T
Q  106 gttgcaaatccaatggctaggattaattgacatttagaaaatcaatgacttgatctcacattataaatgagcactaatt 184  Q
    ||| |||||| |||||||| |||||||||||  |||||||||||||||||||||||| ||| |||||||||||||||||    
T  33722344 gttacaaatctaatggctatgattaattgaccgttagaaaatcaatgacttgatctcgcatcataaatgagcactaatt 33722266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 7 - 200
Target Start/End: Complemental strand, 16595504 - 16595311
Alignment:
Q  7 ggagcagagaggaaagttatttgacaactcaagagaatttttggggtgagtagaagtgagggagatgagctcaatttataggtgttgagccaaagataag 106  Q
    |||| |||||| |||||| ||| |||||||||||||| ||||||||||| |||||||| |||||| || ||| |||||||||||  ||||||||||||||    
T  16595504 ggagaagagagaaaagttctttaacaactcaagagaacttttggggtgattagaagtgggggagaggaactctatttataggtgaagagccaaagataag 16595405  T
Q  107 ttgcaaatccaatggctaggattaattgacatttagaaaatcaatgacttgatctcacattataaatgagcactaattaagaaagttgacatga 200  Q
    || ||||||||||||||||||||| ||||| | || |||||||||||| |||| || | | ||||||||||||| | || || |||||||||||    
T  16595404 ttacaaatccaatggctaggattagttgacctctacaaaatcaatgacatgatttctcctcataaatgagcactcaataggatagttgacatga 16595311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 51 - 180
Target Start/End: Complemental strand, 7216719 - 7216590
Alignment:
Q  51 ggtgagtagaagtgagggagatgagctcaatttataggtgttgagccaaagataagttgcaaatccaatggctaggattaattgacatttagaaaatcaa 150  Q
    ||||||||||||||||||||| |||||| |||| ||||||  ||| ||||||| |||| ||||| ||||||||| ||||| ||||| | || ||||||||    
T  7216719 ggtgagtagaagtgagggagaggagctctatttgtaggtgaagaggcaaagatgagttacaaattcaatggctaagattagttgacctctacaaaatcaa 7216620  T
Q  151 tgacttgatctcacattataaatgagcact 180  Q
    |||| |||| || | | |||||||||||||    
T  7216619 tgacatgatttctcctcataaatgagcact 7216590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 183
Target Start/End: Complemental strand, 2574861 - 2574697
Alignment:
Q  19 aaagttatttgacaactcaagagaatttttggggtgagtagaagtgagggagatgagctcaatttataggtgttgagccaaagataagttgcaaatccaa 118  Q
    |||||| |||||||||||||||||| |||||  || |||| |||||| ||||  | ||||||||||||| || ||| ||||||||||| | |||||||||    
T  2574861 aaagttctttgacaactcaagagaacttttgatgtaagtacaagtgaaggagtggcgctcaatttatagatgatgaaccaaagataagatacaaatccaa 2574762  T
Q  119 tggctaggattaattgacatttagaaaatcaatgacttgatctcacattataaatgagcactaat 183  Q
     |||||| |||| ||||   ||| |||||||| | |||||| || | | ||||||||||||||||    
T  2574761 cggctagaattagttgatcgttataaaatcaacggcttgatatcgcctcataaatgagcactaat 2574697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 7 - 88
Target Start/End: Complemental strand, 39991466 - 39991383
Alignment:
Q  7 ggagcagagaggaaagttatttgacaactcaagagaatttttggggtgagtagaagt--gagggagatgagctcaatttatagg 88  Q
    |||| |||||| |||||| |||||||||| ||||||| |||||| ||||||||||||  ||||||||||| ||| | |||||||    
T  39991466 ggagaagagagaaaagttctttgacaactaaagagaacttttggtgtgagtagaagtaagagggagatgaactctagttatagg 39991383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 88
Target Start/End: Complemental strand, 40684401 - 40684317
Alignment:
Q  4 ggaggagcagagaggaaagttatttgacaactcaagagaatttttggggtgagtagaagtgagggagatgagctcaatttatagg 88  Q
    ||||||| |||||| |||||| ||||||||||||||| || |||||| || |||| |||||||| | | || ||| |||||||||    
T  40684401 ggaggagaagagagaaaagttctttgacaactcaagaaaacttttggtgtcagtacaagtgaggaataagaactctatttatagg 40684317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 7 - 50
Target Start/End: Original strand, 3388682 - 3388725
Alignment:
Q  7 ggagcagagaggaaagttatttgacaactcaagagaatttttgg 50  Q
    |||| |||||| |||||| |||||||||||||||||||||||||    
T  3388682 ggagaagagagaaaagttctttgacaactcaagagaatttttgg 3388725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 12 - 67
Target Start/End: Complemental strand, 15017545 - 15017490
Alignment:
Q  12 agagaggaaagttatttgacaactcaagagaatttttggggtgagtagaagtgagg 67  Q
    |||||| |||||| |||||||| |||||| || ||||||||||||||||| |||||    
T  15017545 agagagaaaagttctttgacaaatcaagataacttttggggtgagtagaaatgagg 15017490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 172
Target Start/End: Original strand, 10566771 - 10566869
Alignment:
Q  74 agctcaatttataggtgttgagccaaagataagttgcaaatccaatggctaggattaattgacatttagaaaatcaatgacttgatctcacattataaa 172  Q
    ||||| |||||||  || |||| ||||||| |||  ||||||||||| ||| ||| | |||||| ||| |||||||||||||||| ||| ||| |||||    
T  10566771 agctctatttataaatgatgaggcaaagatgagtaacaaatccaatgactaagatcatttgacaattataaaatcaatgacttgaactcgcatcataaa 10566869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 48
Target Start/End: Original strand, 12613710 - 12613751
Alignment:
Q  7 ggagcagagaggaaagttatttgacaactcaagagaattttt 48  Q
    |||| |||||| ||||||||||||||||||||||||| ||||    
T  12613710 ggagaagagagaaaagttatttgacaactcaagagaactttt 12613751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 250
Target Start/End: Complemental strand, 33722238 - 33722205
Alignment:
Q  217 aattcacaccttaacactccttgtgctccaacaa 250  Q
    ||||||||||||||||||||||||| ||||||||    
T  33722238 aattcacaccttaacactccttgtgttccaacaa 33722205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 127; Significance: 1e-65; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 7 - 197
Target Start/End: Original strand, 36725267 - 36725457
Alignment:
Q  7 ggagcagagaggaaagttatttgacaactcaagagaatttttggggtgagtagaagtgagggagatgagctcaatttataggtgttgagccaaagataag 106  Q
    |||| |||||| |||||||||||||||||||| |||| |||||| |||||||||||||||||||  ||||||||||||||||||  ||||||||||||||    
T  36725267 ggagaagagagaaaagttatttgacaactcaaaagaacttttggtgtgagtagaagtgagggaggggagctcaatttataggtgaagagccaaagataag 36725366  T
Q  107 ttgcaaatccaatggctaggattaattgacatttagaaaatcaatgacttgatctcacattataaatgagcactaattaagaaagttgaca 197  Q
    || |||||||||||||||||||||||||||  |||||||||||||| ||||||||| ||| ||||||||||||||||| ||||||||||||    
T  36725367 ttacaaatccaatggctaggattaattgaccgttagaaaatcaatggcttgatctcgcatcataaatgagcactaattgagaaagttgaca 36725457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 7 - 200
Target Start/End: Complemental strand, 33380464 - 33380271
Alignment:
Q  7 ggagcagagaggaaagttatttgacaactcaagagaatttttggggtgagtagaagtgagggagatgagctcaatttataggtgttgagccaaagataag 106  Q
    ||||||||||| |||||| ||||||||||||| |||| |||||| ||||||||||||| |||||| ||||||||||||||||||  ||||||||||||||    
T  33380464 ggagcagagagaaaagttctttgacaactcaaaagaacttttggtgtgagtagaagtgggggagaagagctcaatttataggtgaagagccaaagataag 33380365  T
Q  107 ttgcaaatccaatggctaggattaattgacatttagaaaatcaatgacttgatctcacattataaatgagcactaattaagaaagttgacatga 200  Q
    || ||||| ||||| ||||||||| || ||  |||||||||||||| ||||||||||||| ||||||||||||||||| ||||| |||||||||    
T  33380364 ttacaaattcaatgactaggattagttcaccgttagaaaatcaatggcttgatctcacatcataaatgagcactaattgagaaaattgacatga 33380271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 19 - 200
Target Start/End: Original strand, 12906713 - 12906894
Alignment:
Q  19 aaagttatttgacaactcaagagaatttttggggtgagtagaagtgagggagatgagctcaatttataggtgttgagccaaagataagttgcaaatccaa 118  Q
    |||||| ||||||||||||||| || ||||||  ||||||||||||||||||| ||||||||||||||||||  ||| |||||||||||| |||||||||    
T  12906713 aaagttctttgacaactcaagataacttttggtttgagtagaagtgagggagaggagctcaatttataggtgaagagtcaaagataagttacaaatccaa 12906812  T
Q  119 tggctaggattaattgacatttagaaaatcaatgacttgatctcacattataaatgagcactaattaagaaagttgacatga 200  Q
    ||| |||||||| |||||  |||||||||||||| ||| |||| |||| |||||||| ||||||||||||||||||||||||    
T  12906813 tggttaggattagttgaccgttagaaaatcaatggctttatcttacatcataaatgaacactaattaagaaagttgacatga 12906894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 19 - 200
Target Start/End: Complemental strand, 28857584 - 28857403
Alignment:
Q  19 aaagttatttgacaactcaagagaatttttggggtgagtagaagtgagggagatgagctcaatttataggtgttgagccaaagataagttgcaaatccaa 118  Q
    |||||| ||||||||||||| |||| |||||| |||||||||||||||| | | |||||| |||||||||||  ||||||||||| ||||  | ||||||    
T  28857584 aaagttctttgacaactcaaaagaacttttggagtgagtagaagtgaggaacaagagctctatttataggtgaggagccaaagatgagttttagatccaa 28857485  T
Q  119 tggctaggattaattgacatttagaaaatcaatgacttgatctcacattataaatgagcactaattaagaaagttgacatga 200  Q
    |||||| ||| | |||||| ||| ||||| ||||| |||| ||||| | ||||||||||| ||||| |||||||||||||||    
T  28857484 tggctaagatcatttgacagttacaaaattaatgatttgacctcacctcataaatgagcaataattgagaaagttgacatga 28857403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 12 - 200
Target Start/End: Complemental strand, 24159345 - 24159157
Alignment:
Q  12 agagaggaaagttatttgacaactcaagagaatttttggggtgagtagaagtgagggagatgagctcaatttataggtgttgagccaaagataagttgca 111  Q
    |||||| ||||| ||||||||||||||||||| ||||||||||||||||| || |||||| |||||  |||||||||||  ||| ||||||| ||||  |    
T  24159345 agagagaaaagtcatttgacaactcaagagaacttttggggtgagtagaaatgtgggagaagagctttatttataggtgaagagtcaaagatgagttata 24159246  T
Q  112 aatccaatggctaggattaattgacatttagaaaatcaatgacttgatctcacattataaatgagcactaattaagaaagttgacatga 200  Q
    ||||||||||||||||||| ||||| | || |||||||||||| | || || | ||||||||||||||| | |  || |||||||||||    
T  24159245 aatccaatggctaggattagttgacctctacaaaatcaatgacataatttctccttataaatgagcactcaatgggacagttgacatga 24159157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 14 - 119
Target Start/End: Complemental strand, 19309138 - 19309033
Alignment:
Q  14 agaggaaagttatttgacaactcaagagaatttttggggtgagtagaagtgagggagatgagctcaatttataggtgttgagccaaagataagttgcaaa 113  Q
    |||| |||||| ||| |||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||  || ||||||||||||| ||||    
T  19309138 agagaaaagttctttaacaactcaagagaacttttggggtaagtagaagtgagggagaggagctcaatttataggtgaagaaccaaagataagttacaaa 19309039  T
Q  114 tccaat 119  Q
    | ||||    
T  19309038 ttcaat 19309033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 7 - 200
Target Start/End: Original strand, 31064515 - 31064708
Alignment:
Q  7 ggagcagagaggaaagttatttgacaactcaagagaatttttggggtgagtagaagtgagggagatgagctcaatttataggtgttgagccaaagataag 106  Q
    |||| |||||| ||| || |||||||||||||||||| ||||| |||||| |||||||||| | | |||||  |||||||||||  || |||||||| ||    
T  31064515 ggagaagagagaaaaattctttgacaactcaagagaacttttgtggtgagaagaagtgaggaacaagagctatatttataggtgaggaaccaaagatgag 31064614  T
Q  107 ttgcaaatccaatggctaggattaattgacatttagaaaatcaatgacttgatctcacattataaatgagcactaattaagaaagttgacatga 200  Q
    ||  | |||||||||||| ||| | |||||  ||| ||||| ||||  |||| ||||| | ||||||||||| ||||| | |||||||||||||    
T  31064615 ttttagatccaatggctacgatcatttgaccgttacaaaataaatggtttgacctcacctaataaatgagcaataattgataaagttgacatga 31064708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 7 - 136
Target Start/End: Complemental strand, 23191557 - 23191428
Alignment:
Q  7 ggagcagagaggaaagttatttgacaactcaagagaatttttggggtgagtagaagtgagggagatgagctcaatttataggtgttgagccaaagataag 106  Q
    |||| |||||| || ||| ||||||||||||| |||  |||||||||||| |||||||||| |   |||||| |||||||||||  ||| ||||||||||    
T  23191557 ggagaagagagaaatgttctttgacaactcaaaagatcttttggggtgagaagaagtgaggaaagagagctctatttataggtgaggagtcaaagataag 23191458  T
Q  107 ttgcaaatccaatggctaggattaattgac 136  Q
    || |||||||||||| |||||||| |||||    
T  23191457 ttacaaatccaatggttaggattagttgac 23191428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 7 - 130
Target Start/End: Complemental strand, 2493357 - 2493234
Alignment:
Q  7 ggagcagagaggaaagttatttgacaactcaagagaatttttggggtgagtagaagtgagggagatgagctcaatttataggtgttgagccaaagataag 106  Q
    |||| |||||| |||||| ||||||||||||| |||| |||||| ||||  |||||||||| |   |||||| |||||||||||  ||||||||||||||    
T  2493357 ggagaagagagaaaagttttttgacaactcaaaagaacttttggtgtgatcagaagtgaggaatgagagctctatttataggtgaggagccaaagataag 2493258  T
Q  107 ttgcaaatccaatggctaggatta 130  Q
    || ||||| |||||| ||||||||    
T  2493257 ttacaaattcaatggttaggatta 2493234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 104 - 200
Target Start/End: Complemental strand, 19309010 - 19308914
Alignment:
Q  104 aagttgcaaatccaatggctaggattaattgacatttagaaaatcaatgacttgatctcacattataaatgagcactaattaagaaagttgacatga 200  Q
    ||||| ||||| |||  |||| ||||| |||||  ||||||||||||||| || ||||| | | ||||||||| ||||||| |||||||||||||||    
T  19309010 aagttacaaattcaacagctatgattagttgactgttagaaaatcaatgattttatctctcctcataaatgagtactaattgagaaagttgacatga 19308914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 7 - 90
Target Start/End: Complemental strand, 27761376 - 27761296
Alignment:
Q  7 ggagcagagaggaaagttatttgacaactcaagagaatttttggggtgagtagaagtgagggagatgagctcaatttataggtg 90  Q
    |||| |||||| ||||||||||||||||||  ||||| ||||| ||||||||||||||||| ||| | |||| |||||||||||    
T  27761376 ggagaagagagaaaagttatttgacaactc--gagaacttttgaggtgagtagaagtgaggaaga-gtgctctatttataggtg 27761296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 32987785 - 32987853
Alignment:
Q  19 aaagttatttgacaactcaagagaatttttggggtgagtagaagtgagggagatgagctcaatttatag 87  Q
    |||||| ||||| ||||||| | || |||||  ||||||| |||||||||||| |||||||||||||||    
T  32987785 aaagttttttgaaaactcaaaaaaacttttgctgtgagtaaaagtgagggagaagagctcaatttatag 32987853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 90
Target Start/End: Original strand, 9252899 - 9252951
Alignment:
Q  38 agagaatttttggggtgagtagaagtgagggagatgagctcaatttataggtg 90  Q
    |||||| |||||| ||||||| |||||||||||| |||||  |||||||||||    
T  9252899 agagaacttttggtgtgagtataagtgagggagaggagctatatttataggtg 9252951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 110; Significance: 2e-55; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 7 - 200
Target Start/End: Complemental strand, 6897937 - 6897744
Alignment:
Q  7 ggagcagagaggaaagttatttgacaactcaagagaatttttggggtgagtagaagtgagggagatgagctcaatttataggtgttgagccaaagataag 106  Q
    |||| |||||| |||||| |||||||||||||||||| ||||||||| |||||||||||||| ||  | |||||||||||||||  ||||||||||||||    
T  6897937 ggagaagagagaaaagttctttgacaactcaagagaacttttggggttagtagaagtgagggggaaaaactcaatttataggtgaagagccaaagataag 6897838  T
Q  107 ttgcaaatccaatggctaggattaattgacatttagaaaatcaatgacttgatctcacattataaatgagcactaattaagaaagttgacatga 200  Q
    || ||||| ||||| ||| ||||| |||||  |||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||    
T  6897837 ttacaaattcaatgactatgattagttgaccgttagaaaatcaatgacttaatctcacatcataaatgagcactaattaaaaaagttgacatga 6897744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 7 - 87
Target Start/End: Complemental strand, 29477793 - 29477713
Alignment:
Q  7 ggagcagagaggaaagttatttgacaactcaagagaatttttggggtgagtagaagtgagggagatgagctcaatttatag 87  Q
    |||| |||||| |||||| |||||||||||||||||| |||||| |||||||||||||||||||||| |||||||||||||    
T  29477793 ggagaagagagaaaagttctttgacaactcaagagaacttttggtgtgagtagaagtgagggagatgggctcaatttatag 29477713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 128
Target Start/End: Complemental strand, 4333293 - 4333196
Alignment:
Q  31 caactcaagagaatttttggggtgagtagaagtgagggagatgagctcaatttataggtgttgagccaaagataagttgcaaatccaatggctaggat 128  Q
    |||||| ||| || |||||| | |||||||| ||| ||||||| |||| ||||| ||||| | ||||  |||| ||| ||||||| ||||||||||||    
T  4333293 caactctagataacttttggtgcgagtagaactgaaggagatgtgctctatttagaggtgataagccgtagatgagtagcaaatcaaatggctaggat 4333196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 128
Target Start/End: Complemental strand, 4337540 - 4337443
Alignment:
Q  31 caactcaagagaatttttggggtgagtagaagtgagggagatgagctcaatttataggtgttgagccaaagataagttgcaaatccaatggctaggat 128  Q
    |||||| ||| || |||||| | |||||||| ||| ||||||| |||| ||||| ||||| | ||||  |||| ||| ||||||| ||||||||||||    
T  4337540 caactctagataacttttggtgcgagtagaactgaaggagatgtgctctatttagaggtgataagccgtagatgagtagcaaatcaaatggctaggat 4337443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 103
Target Start/End: Complemental strand, 25831889 - 25831792
Alignment:
Q  6 aggagcagagaggaaagttatttgacaactcaagagaatttttggggtgagtagaagtgagggagatgagctcaatttataggtgttgagccaaagat 103  Q
    ||||| |||||  |||||| |||||||||||||||||| |||||| || || |||||||||  |    ||||| |||||||||||  |||||||||||    
T  25831889 aggagaagagataaaagttctttgacaactcaagagaacttttggtgtaagaagaagtgagaaatgaaagctctatttataggtgaggagccaaagat 25831792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 93; Significance: 3e-45; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 12 - 200
Target Start/End: Original strand, 14105148 - 14105336
Alignment:
Q  12 agagaggaaagttatttgacaactcaagagaatttttggggtgagtagaagtgagggagatgagctcaatttataggtgttgagccaaagataagttgca 111  Q
    |||||| ||||||||||||||||||||||||| |||||||||||||| |||||||||||| |||||| |||||||||||  ||||||||||| |||| ||    
T  14105148 agagagaaaagttatttgacaactcaagagaacttttggggtgagtaaaagtgagggagaggagctctatttataggtgaggagccaaagatgagttaca 14105247  T
Q  112 aatccaatggctaggattaattgacatttagaaaatcaatgacttgatctcacattataaatgagcactaattaagaaagttgacatga 200  Q
    ||||||||||||||||||| ||||| | || |||||||||||| |||| || | | | ||||||||||| | |  || |||||||||||    
T  14105248 aatccaatggctaggattagttgacctctacaaaatcaatgacatgatttctcctcagaaatgagcactcaatgggatagttgacatga 14105336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 6 - 158
Target Start/End: Complemental strand, 13060018 - 13059867
Alignment:
Q  6 aggagcagagaggaaagttatttgacaactcaagagaatttttggggtgagtagaagtgagggagatgagctcaatttataggtgttgagccaaagataa 105  Q
    ||||| |||||| |||||| ||||| |||||||||||| ||||| | | | || ||||||| || |||||| | |||||||||||  ||| |||||||||    
T  13060018 aggagaagagagaaaagttctttgaaaactcaagagaacttttgtgttaa-taaaagtgagagatatgagcactatttataggtgaggagtcaaagataa 13059920  T
Q  106 gttgcaaatccaatggctaggattaattgac-atttagaaaatcaatgacttga 158  Q
    |||  |||| ||||||||||||||| ||||| ||||| ||||||||||| ||||    
T  13059919 gttataaattcaatggctaggattagttgaccattta-aaaatcaatgatttga 13059867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 196
Target Start/End: Complemental strand, 44957083 - 44956894
Alignment:
Q  7 ggagcagagaggaaagttatttgacaactcaagagaatttttggggtgagtagaagtgagggagatgagctcaatttataggtgttgagccaaagataag 106  Q
    |||| |||||| ||| || ||| |||||||||||||| |||||||||||||| |||||||| |   ||| || ||||||||||| |||  ||||||| |     
T  44957083 ggagaagagagaaaatttctttaacaactcaagagaacttttggggtgagtacaagtgaggaatgagagttctatttataggtgatgaatcaaagatgaa 44956984  T
Q  107 ttgcaaatccaatggctaggattaattgacatttagaaaatcaatgacttgatctcacattataaatgagcactaattaagaaagttgac 196  Q
    ||  | |||| |  |||| ||| | |||||  ||||||||| |||   ||||  |||| | ||||||||||| ||||| |||||||||||    
T  44956983 ttttagatccgacagctaagatcatttgaccgttagaaaattaattgtttgacatcacctcataaatgagcaataattgagaaagttgac 44956894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 91; Significance: 4e-44; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 7 - 200
Target Start/End: Complemental strand, 48431838 - 48431647
Alignment:
Q  7 ggagcagagaggaaagttatttgacaactcaagagaatttttggggtgagtagaagtgagggagatgagctcaatttataggtgttgagccaaagataag 106  Q
    |||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||  |||||||| || ||    
T  48431838 ggagaagagagaaaagttatttgacaactcaagagaacttttggggtgagtagaagtgtgggagatgagctctatttataggtgaagagccaaatatgag 48431739  T
Q  107 ttgcaaatccaatggctaggattaattgacatttagaaaatcaatgacttgatctcacattataaatgagcactaattaagaaagttgacatga 200  Q
    || ||||||||||||||||||||| ||||||| |  | |||||||||| |||| ||   | ||||||||||||| | | ||| |||||||||||    
T  48431738 ttacaaatccaatggctaggattagttgacatct--acaatcaatgacatgatttcttctcataaatgagcactcaatgagatagttgacatga 48431647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 7 - 198
Target Start/End: Complemental strand, 48435422 - 48435232
Alignment:
Q  7 ggagcagagaggaaagttatttgacaactcaagagaatttttggggtgagtagaagtgagggagatgagctcaatttataggtgttgagccaaagataag 106  Q
    |||| |||||| |||||| ||| |||||| ||||||| |||||| |||||||||||||| ||||||| |||| ||||||||||   ||||||||||| ||    
T  48435422 ggagaagagagaaaagttctttcacaacttaagagaacttttggagtgagtagaagtgaaggagatgggctctatttataggtaaagagccaaagatgag 48435323  T
Q  107 ttgcaaatccaatggctaggattaattgacatttagaaaatcaatgacttgatctcacattataaatgagcactaattaagaaagttgacat 198  Q
    || ||||||||||||||||||||| ||||||| ||  ||||||||||| |||| || | | ||||||||||||| | | ||| |||||||||    
T  48435322 ttacaaatccaatggctaggattagttgacatcta-caaatcaatgacatgatttctcctcataaatgagcactcaatgagatagttgacat 48435232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 7 - 175
Target Start/End: Original strand, 16983521 - 16983689
Alignment:
Q  7 ggagcagagaggaaagttatttgacaactcaagagaatttttggggtgagtagaagtgagggagatgagctcaatttataggtgttgagccaaagataag 106  Q
    |||| |||||| ||| ||||||||||||||||||||| |||||||| || ||||||||||||||| |||||| | |||||||||   |||||||||| |     
T  16983521 ggagaagagagaaaaattatttgacaactcaagagaacttttggggagaatagaagtgagggagaggagctctacttataggtgaaaagccaaagatgaa 16983620  T
Q  107 ttgcaaatccaatggctaggattaattgacatttagaaaatcaatgacttgatctcacattataaatga 175  Q
    || ||||||||||| ||| ||||| |||||  ||| |||||||||| ||||||||| | | ||||||||    
T  16983621 ttacaaatccaatgactatgattagttgaccgttaaaaaatcaatggcttgatctcgcctcataaatga 16983689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 200
Target Start/End: Original strand, 4662736 - 4662917
Alignment:
Q  19 aaagttatttgacaactcaagagaatttttggggtgagtagaagtgagggagatgagctcaatttataggtgttgagccaaagataagttgcaaatccaa 118  Q
    |||||| ||||| |||||||||||| ||||||||| | || |||||||  |   ||| || ||||||||||   |||||| ||||||||| |||||||||    
T  4662736 aaagttctttgaaaactcaagagaacttttggggtaattacaagtgagaaatgagagttctatttataggtaaggagccagagataagttacaaatccaa 4662835  T
Q  119 tggctaggattaattgacatttagaaaatcaatgacttgatctcacattataaatgagcactaattaagaaagttgacatga 200  Q
    || ||||||||| |||||   || |||||||||||| | || || | | ||||||||||||| | | ||| |||||||||||    
T  4662836 tgcctaggattagttgaccgctacaaaatcaatgacataatttctcctcataaatgagcactcaatgagatagttgacatga 4662917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 50
Target Start/End: Original strand, 26386205 - 26386248
Alignment:
Q  7 ggagcagagaggaaagttatttgacaactcaagagaatttttgg 50  Q
    |||| |||||| ||||||||||||||||||||||||||||||||    
T  26386205 ggagaagagagaaaagttatttgacaactcaagagaatttttgg 26386248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 50
Target Start/End: Original strand, 16815348 - 16815392
Alignment:
Q  6 aggagcagagaggaaagttatttgacaactcaagagaatttttgg 50  Q
    ||||| |||||| |||||| |||||||||||||||||| ||||||    
T  16815348 aggagaagagagaaaagttctttgacaactcaagagaacttttgg 16815392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 50
Target Start/End: Complemental strand, 17934640 - 17934596
Alignment:
Q  6 aggagcagagaggaaagttatttgacaactcaagagaatttttgg 50  Q
    ||||| |||||| |||||| |||||||||||||||||| ||||||    
T  17934640 aggagaagagagaaaagttctttgacaactcaagagaacttttgg 17934596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 90; Significance: 2e-43; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 7 - 200
Target Start/End: Original strand, 19950378 - 19950571
Alignment:
Q  7 ggagcagagaggaaagttatttgacaactcaagagaatttttggggtgagtagaagtgagggagatgagctcaatttataggtgttgagccaaagataag 106  Q
    |||| |||||| |||||| |||||||||||||||||| ||||| ||||||||||||||||||||| || ||| |||||||||||  ||||||||||| ||    
T  19950378 ggagaagagagaaaagttctttgacaactcaagagaacttttgaggtgagtagaagtgagggagaggaactctatttataggtgaagagccaaagatgag 19950477  T
Q  107 ttgcaaatccaatggctaggattaattgacatttagaaaatcaatgacttgatctcacattataaatgagcactaattaagaaagttgacatga 200  Q
    || ||||||||||||||| ||||| ||||| | || |||||||||||| |||| || | | ||||||||||||| | ||||| |||||| ||||    
T  19950478 ttacaaatccaatggctatgattagttgacctctacaaaatcaatgacatgatttctcctcataaatgagcactcaataagatagttgatatga 19950571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 7 - 200
Target Start/End: Original strand, 19954832 - 19955025
Alignment:
Q  7 ggagcagagaggaaagttatttgacaactcaagagaatttttggggtgagtagaagtgagggagatgagctcaatttataggtgttgagccaaagataag 106  Q
    |||| |||||| ||| || |||||||||||||||||| |||||||||||||||||||| |||||| || ||| ||||||| |||  ||||||||||| ||    
T  19954832 ggagaagagagaaaaattctttgacaactcaagagaacttttggggtgagtagaagtgtgggagaggaactctatttataagtgaagagccaaagatgag 19954931  T
Q  107 ttgcaaatccaatggctaggattaattgacatttagaaaatcaatgacttgatctcacattataaatgagcactaattaagaaagttgacatga 200  Q
    || |||||||| |||||||||||| ||||| | || |||||||||||| |||| |  | | ||||||||||||| | || || |||||||||||    
T  19954932 ttacaaatccattggctaggattagttgacctctacaaaatcaatgacatgatttatcctcataaatgagcactcaataggatagttgacatga 19955025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 7 - 154
Target Start/End: Original strand, 2470536 - 2470683
Alignment:
Q  7 ggagcagagaggaaagttatttgacaactcaagagaatttttggggtgagtagaagtgagggagatgagctcaatttataggtgttgagccaaagataag 106  Q
    |||| |||||| |||||| ||||||||||||||| || ||||||| | ||||||||||||||||| |||||| |||||||||||  ||||||||||| ||    
T  2470536 ggagaagagagaaaagttctttgacaactcaagataacttttgggatcagtagaagtgagggagaggagctctatttataggtgaagagccaaagatgag 2470635  T
Q  107 ttgcaaatccaatggctaggattaattgacatttagaaaatcaatgac 154  Q
    || |||||||||||||||||||||  |||| | || ||||||||||||    
T  2470636 ttacaaatccaatggctaggattagctgacctctacaaaatcaatgac 2470683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 12 - 180
Target Start/End: Original strand, 7146380 - 7146550
Alignment:
Q  12 agagaggaaagttatttgacaactcaagagaatttttggggtgagtagaagtgagggagatgagctcaatttataggtgttgagccaaagataagttgca 111  Q
    |||||| |||||||||||||||||||| |||| |||||||||||||| ||| || | |   || ||| ||||||||| |  |||||||||||||||| ||    
T  7146380 agagagaaaagttatttgacaactcaaaagaacttttggggtgagtaaaagcgaagaatgagaactctatttataggcgaggagccaaagataagttaca 7146479  T
Q  112 aatccaatggc--taggattaattgacatttagaaaatcaatgacttgatctcacattataaatgagcact 180  Q
    ||||||||| |  ||||||||||||||   || |||||||||| | ||||||| | | ||||| |||||||    
T  7146480 aatccaatgactataggattaattgaccactacaaaatcaatgtcgtgatctcgcctcataaacgagcact 7146550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 7 - 118
Target Start/End: Complemental strand, 21640696 - 21640587
Alignment:
Q  7 ggagcagagaggaaagttatttgacaactcaagagaatttttggggtgagtagaagtgagggagatgagctcaatttataggtgttgagccaaagataag 106  Q
    |||| |||||| |||||| |||||||||||||||||| |||||||||||||| |||||||| ||| | |||| |||||||||||  ||| ||||||| ||    
T  21640696 ggagaagagagaaaagttctttgacaactcaagagaacttttggggtgagtaaaagtgaggaaga-gtgctctatttataggtgaggagtcaaagatgag 21640598  T
Q  107 ttgcaaatccaa 118  Q
    || |||||||||    
T  21640597 tt-caaatccaa 21640587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 7 - 67
Target Start/End: Complemental strand, 4543830 - 4543770
Alignment:
Q  7 ggagcagagaggaaagttatttgacaactcaagagaatttttggggtgagtagaagtgagg 67  Q
    |||| |||||| |||||| |||||||||||||||||| |||||||||||||||||||||||    
T  4543830 ggagaagagagaaaagttctttgacaactcaagagaacttttggggtgagtagaagtgagg 4543770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 147
Target Start/End: Original strand, 30779410 - 30779545
Alignment:
Q  7 ggagcagagaggaaagttatttgacaactcaagagaatttttggggtgagtagaagtgagggagatgagctcaatttataggtgttgagccaaagataag 106  Q
    |||| |||||| |||||| ||| ||||||||| | || |||| | |||  ||||||||||||| ||||     ||||||||| |  ||||||||||||||    
T  30779410 ggagtagagagaaaagttttttaacaactcaaaaaaactttttgtgtgtttagaagtgagggaaatga-----atttataggcgaggagccaaagataag 30779504  T
Q  107 ttgcaaatccaatggctaggattaattgacatttagaaaat 147  Q
    || ||||||||||| ||| ||||  |||||  |||||||||    
T  30779505 ttacaaatccaatgactatgattggttgaccgttagaaaat 30779545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 7 - 177
Target Start/End: Complemental strand, 171250 - 171080
Alignment:
Q  7 ggagcagagaggaaagttatttgacaactcaagagaatttttggggtgagtagaagtgagggagatgagctcaatttataggtgttgagccaaagataag 106  Q
    |||| |||||| |||||| ||||||||||||||| || ||||||| ||||||||||||| ||||| |||||| |||||||||||  |||||||| || ||    
T  171250 ggagaagagagaaaagttctttgacaactcaagataacttttgggatgagtagaagtgaaggagaggagctctatttataggtgaagagccaaaaatgag 171151  T
Q  107 ttgcaaatccaatggctaggattaattgacatttagaaaatcaatgacttgatctcacattataaatgagc 177  Q
    || ||||||||||||||||||||||||||| | || |||||||||||| |||| || | | ||||||||||    
T  171150 ttacaaatccaatggctaggattaattgacctctacaaaatcaatgacatgatttctcctcataaatgagc 171080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 77; Significance: 9e-36; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 12 - 136
Target Start/End: Complemental strand, 32814601 - 32814477
Alignment:
Q  12 agagaggaaagttatttgacaactcaagagaatttttggggtgagtagaagtgagggagatgagctcaatttataggtgttgagccaaagataagttgca 111  Q
    |||||| |||||| ||||| |||||||||||| ||||||||||||||||| |||| |||| ||||||||||||||||||  |||||||||||||||| ||    
T  32814601 agagagaaaagttctttgataactcaagagaacttttggggtgagtagaattgagtgagaggagctcaatttataggtgaagagccaaagataagttaca 32814502  T
Q  112 aatccaatggctaggattaattgac 136  Q
    |||||| |||||||||||| |||||    
T  32814501 aatccattggctaggattagttgac 32814477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 25 - 180
Target Start/End: Original strand, 35130203 - 35130357
Alignment:
Q  25 atttgacaactcaagagaatttttggggtgagtagaagtgagggagatgagctcaatttataggtgttgagccaaagataagttgcaaatccaatggcta 124  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||||| |||||| |||||||||||  ||| ||||||| |||| ||||||||||| |||    
T  35130203 atttgacaactcaagagaacttttgggatgagtagaagtgagggagaggagctctatttataggtgaagagtcaaagatgagttacaaatccaatgacta 35130302  T
Q  125 ggattaattgacatttagaaaatcaatgacttgatctcacattataaatgagcact 180  Q
    |||||| ||||||| ||  ||||||||||| |||| || | | |||||||||||||    
T  35130303 ggattagttgacatcta-caaatcaatgacatgatttctcctcataaatgagcact 35130357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 7 - 183
Target Start/End: Original strand, 14042203 - 14042382
Alignment:
Q  7 ggagcagagaggaaagttatttgacaactcaagagaatttttggggtgagtagaagtgagggagatgagctcaatttata-----ggtgttgagccaaag 101  Q
    |||| |||||| |||||| |||||||||||||| ||| |||||| |||| ||||||||||||||| ||||||||||||||     ||||  |||||||||    
T  14042203 ggagaagagagaaaagttctttgacaactcaagggaacttttggtgtgaatagaagtgagggagaggagctcaatttatattataggtgaagagccaaag 14042302  T
Q  102 ataagttgcaaatccaatggctaggattaattgacatttagaaaatcaatgacttgatctcacattataaatgagcactaat 183  Q
    ||||||| ||||||| || |||||||||| |||||  || ||||||||||| |||||  || ||| ||||||||||||||||    
T  14042303 ataagttacaaatccgatagctaggattagttgaccgttggaaaatcaatggcttga--tcgcatcataaatgagcactaat 14042382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 26 - 136
Target Start/End: Original strand, 14776121 - 14776231
Alignment:
Q  26 tttgacaactcaagagaatttttggggtgagtagaagtgagggagatgagctcaatttataggtgttgagccaaagataagttgcaaatccaatggctag 125  Q
    |||||||||||||||||| |||||| |||   |||||||||| |  |||||||   |||||||||  |||||||||||||||| |||||||||||| |||    
T  14776121 tttgacaactcaagagaacttttggtgtgcaaagaagtgaggaatgtgagctcttcttataggtgaggagccaaagataagttacaaatccaatggttag 14776220  T
Q  126 gattaattgac 136  Q
    ||||| |||||    
T  14776221 gattagttgac 14776231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 12 - 87
Target Start/End: Complemental strand, 29610511 - 29610434
Alignment:
Q  12 agagaggaaagttatttgacaactcaagaga--atttttggggtgagtagaagtgagggagatgagctcaatttatag 87  Q
    |||||| |||||| |||||||||||||||||  | ||||||||||||||||||| ||||||| |||||||||||||||    
T  29610511 agagagaaaagttttttgacaactcaagagagaacttttggggtgagtagaagtaagggagaggagctcaatttatag 29610434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 139 - 200
Target Start/End: Complemental strand, 29610190 - 29610129
Alignment:
Q  139 ttagaaaatcaatgacttgatctcacattataaatgagcactaattaagaaagttgacatga 200  Q
    ||||||||||||| |||||||||| | | ||||||||||||||||| |||||||||||||||    
T  29610190 ttagaaaatcaataacttgatctcgcctcataaatgagcactaattgagaaagttgacatga 29610129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 139 - 200
Target Start/End: Complemental strand, 18038900 - 18038839
Alignment:
Q  139 ttagaaaatcaatgacttgatctcacattataaatgagcactaattaagaaagttgacatga 200  Q
    |||||||||||||| ||| |||| |||| ||||||||||||||| | |||||| ||||||||    
T  18038900 ttagaaaatcaatggcttaatctaacatcataaatgagcactaactgagaaagctgacatga 18038839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 48
Target Start/End: Complemental strand, 18909653 - 18909612
Alignment:
Q  7 ggagcagagaggaaagttatttgacaactcaagagaattttt 48  Q
    |||| |||||| |||||| |||||||||||||||||||||||    
T  18909653 ggagaagagagaaaagttctttgacaactcaagagaattttt 18909612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 118
Target Start/End: Complemental strand, 18265028 - 18264931
Alignment:
Q  19 aaagttatttgacaactcaagagaatttttggggtgagtagaagtgagggagatgagctcaatttataggtgttgagccaaagataagttgcaaatccaa 118  Q
    ||||||||||||||||| ||||||| ||||||||||||||||||||||| ||| | |||| |||||||| ||  ||||||||||| |||| |||||||||    
T  18265028 aaagttatttgacaacttaagagaacttttggggtgagtagaagtgaggaaga-gtgctctatttatagatgaggagccaaagatgagtt-caaatccaa 18264931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 19 - 180
Target Start/End: Original strand, 15591164 - 15591325
Alignment:
Q  19 aaagttatttgacaactcaagagaatttttggggtgagtagaagtgagggagatgagctcaatttataggtgttgagccaaagataagttgcaaatccaa 118  Q
    |||||||||||  ||||||| |||| ||||||| |||||  |||||| | |   |||||| |||||||||||  ||| |||||||||||| |||||||||    
T  15591164 aaagttatttgttaactcaaaagaacttttgggatgagtgcaagtgaagaatgagagctctatttataggtgaggagacaaagataagttacaaatccaa 15591263  T
Q  119 tggctaggattaattgacatttagaaaatcaatgacttgatctcacattataaatgagcact 180  Q
    ||  |||||||| ||||    || || ||||||||| ||||||| | | |||||||||||||    
T  15591264 tgattaggattagttgatcgctacaatatcaatgacatgatctcgcctcataaatgagcact 15591325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 7 - 50
Target Start/End: Complemental strand, 66379 - 66336
Alignment:
Q  7 ggagcagagaggaaagttatttgacaactcaagagaatttttgg 50  Q
    |||| ||||||||||||| |||||||||||||||||| ||||||    
T  66379 ggagaagagaggaaagttctttgacaactcaagagaacttttgg 66336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 100
Target Start/End: Original strand, 5228 - 5321
Alignment:
Q  7 ggagcagagaggaaagttatttgacaactcaagagaatttttggggtgagtagaagtgagggagatgagctcaatttataggtgttgagccaaa 100  Q
    |||| |||||| | |||| ||||||||||||| |||| ||||||  | |||||||||||||||  ||||||  ||||||| |||  ||||||||    
T  5228 ggagaagagagaatagttctttgacaactcaatagaacttttggtttaagtagaagtgagggatgtgagctatatttataagtgaggagccaaa 5321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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