View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0936_low_24 (Length: 275)
Name: NF0936_low_24
Description: NF0936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0936_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 47 - 239
Target Start/End: Complemental strand, 2614469 - 2614277
Alignment:
| Q |
47 |
atatgctttcacatcagcttatcctttaccacacaaatgttgaattttacgcttaaatttaaagtttctatctttgacttttagcttataacattagttt |
146 |
Q |
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| T |
2614469 |
atatgctttcacatcagcttatcctttaccacacaaatgttgaattttacgcttaaatttaaagtttctatctttgacttttagcttataacattagttt |
2614370 |
T |
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| Q |
147 |
cttgtcttgttaaatgacatgatatttttagaaactgaaatggcctaatatatacagagaattcattgaaagagaaatgttaagatgcatact |
239 |
Q |
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| T |
2614369 |
cttgtcttgttaaatgacatgatatttttagaaacagaaatggcctaatatatacagagaattcattgaaagagaaattttaacatgcatact |
2614277 |
T |
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