View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0936_low_25 (Length: 269)
Name: NF0936_low_25
Description: NF0936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0936_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 20513952 - 20514195
Alignment:
| Q |
1 |
tctgtgctaagaccttatatttcatcaatgtgtttatgattattccttttggcacaattttaatacaaacacatat--tgtattagagaaataccacaca |
98 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
20513952 |
tctgtgctaaaaccttatatttcatcaatgtgtttatgattattccttttggcacaattttaatacaaacacatatattgtattagagaaataccacaca |
20514051 |
T |
|
| Q |
99 |
agtagttaatcatatatgcaagcatgattgtgtaatagacgcactatataaaacaattcctcttcgtaccataagctttgtacttccctccatgttagtt |
198 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
20514052 |
agtagttaatcatatatgcaaacatgattgtgtaatagacgcactatataaaacaattcctcttcgtaccataagctctgtacttccctccatgttagtt |
20514151 |
T |
|
| Q |
199 |
gacggagaaataccagatga--ttgcatatactagacacattct |
240 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||| |
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| T |
20514152 |
gacggagaaataccagatgatgttgcatatactagacacattct |
20514195 |
T |
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