View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0936_low_3 (Length: 524)
Name: NF0936_low_3
Description: NF0936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0936_low_3 |
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| [»] scaffold0856 (3 HSPs) |
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Alignment Details
Target: scaffold0856 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: scaffold0856
Description:
Target: scaffold0856; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 55 - 274
Target Start/End: Complemental strand, 3710 - 3491
Alignment:
| Q |
55 |
caaccacgaagtttagtcagctaaggaacaagctaggagtagtcaaaccatcctctagcttgagaggggcagttaaggaatgatcatagccagtttgaaa |
154 |
Q |
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| T |
3710 |
caaccatgaagtttagtcagctaaggaacaagctaggagtagtcaaaccatcctctagcttgagaggggcagttaaggaatgatcatagccagtttgaaa |
3611 |
T |
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| Q |
155 |
ttgtctccgaccgatagcatgatatcttgatttaaatttgtagattttctaaatctcttatctttcatctgtaattcggaattgtgttatcttatcctaa |
254 |
Q |
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| T |
3610 |
ttgtctccgaccgatagcatgatatcttgatttaaatttgtagattttctaaatctcttatctttcatctgtaattcggaattgtgttatcttatcctaa |
3511 |
T |
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| Q |
255 |
ttattctgtctgtaacaaat |
274 |
Q |
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|||||||||||||| ||||| |
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| T |
3510 |
ttattctgtctgtagcaaat |
3491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0856; HSP #2
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 315 - 495
Target Start/End: Complemental strand, 3497 - 3317
Alignment:
| Q |
315 |
agcaaatagcatttatatgattaatccagccttcagttttttctatcttgtagaatatattactcctttagttgcccttgaaatgggaagtccgttagtg |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3497 |
agcaaatagcatttatatgattaatccagccttcagttttttctatcttgtagaatatattactcctttagttgcccttgaaatgggaagtccgttagtg |
3398 |
T |
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| Q |
415 |
agtggacttaggaacctcttcattgagtatattatcatatttgaaattgaaagatcccttcttatgaaacaaagtgaaatg |
495 |
Q |
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| T |
3397 |
agtggacttaggaacctcttcattgagtatattatcatatttgaaattgaaagatcccttcttatgaaacaaagtgcaatg |
3317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0856; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 11 - 59
Target Start/End: Complemental strand, 3796 - 3748
Alignment:
| Q |
11 |
cagagatcagttgttgagtaataacgtgactatagcctatggtccaacc |
59 |
Q |
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| T |
3796 |
cagagatcagttgttgagtaataacgcgactatagcctatggtccaacc |
3748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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