View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0936_low_31 (Length: 251)
Name: NF0936_low_31
Description: NF0936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0936_low_31 |
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Alignment Details
Target: chr8 (Bit Score: 180; Significance: 3e-97; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 11 - 235
Target Start/End: Complemental strand, 36993623 - 36993400
Alignment:
| Q |
11 |
aacatgaattaaagggctagcaatatggacttacagtgtgcctgatgagtcctaacattaacatgtctagccaaatcttcaattgcttccttctgacggt |
110 |
Q |
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| T |
36993623 |
aacatgaattaaagggctagca-tatggacttacagtgtgcctgatgagtcctaacattaacatgtctagccaaatcttcaattgcttccttctgacgtt |
36993525 |
T |
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| Q |
111 |
gtggatatctgtagggtcggatgttgggaattcgagnnnnnnntccttgattacaatagcatgatcatacggtctgtgtggaggtaattctgataccttt |
210 |
Q |
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| T |
36993524 |
gtagatatctgtagtgtcggatgttgggaattcgagccccccctccttgattacaatagcatgatcatacggtctgtgtggaggcaattctgataccttt |
36993425 |
T |
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| Q |
211 |
ccaaacagatcaacatactctctta |
235 |
Q |
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| T |
36993424 |
ccaaacagatcaacatactctctta |
36993400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 11 - 230
Target Start/End: Complemental strand, 37003921 - 37003703
Alignment:
| Q |
11 |
aacatgaattaaagggctagcaatatggacttacagtgtgcctgatgagtcctaacattaacatgtct--agccaaatcttcaattgcttccttctgacg |
108 |
Q |
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| T |
37003921 |
aacatgaattaaagggctagca-tatcgacttaccgtgggcctgacgagtcctgatattaacatgtctgtagcaaaagcatcaattgcttccttctgact |
37003823 |
T |
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| Q |
109 |
gtgtggatatctgtagggtcggatgttgggaattcgagnnnnnnntccttgattacaatagcatgatcatacggtctgtgtggaggtaattctgatacct |
208 |
Q |
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| T |
37003822 |
gtgccggtatctgtagggtcggatgttgggaattcgag--tcgcctccttgatttcaatagcatgatcatacgggttgcgtggaggcaattctgatacct |
37003725 |
T |
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| Q |
209 |
ttccaaacagatcaacatactc |
230 |
Q |
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| T |
37003724 |
ctcgaaacagattaacatactc |
37003703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 196 - 235
Target Start/End: Complemental strand, 37003698 - 37003659
Alignment:
| Q |
196 |
aattctgatacctttccaaacagatcaacatactctctta |
235 |
Q |
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| T |
37003698 |
aattctgatacctctcgaaacagatcaacatactctctta |
37003659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 53 - 232
Target Start/End: Complemental strand, 22188575 - 22188399
Alignment:
| Q |
53 |
tgatgagtcctaacattaacatgtct--agccaaatcttcaattgcttccttctgacggtgtggatatctgtagggtcggatgttgggaattcgagnnnn |
150 |
Q |
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| T |
22188575 |
tgatgagtcatgacattaacatgtttgtagccaaagcttcaattgcttcttt--gacggtgtgggtatctgtagggacggatgttgggaattcgagcccc |
22188478 |
T |
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| Q |
151 |
nnntccttgattacaatagcatgatcatacggtctgtgtggaggtaattctgatacctttccaaacagatcaacatactctc |
232 |
Q |
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| T |
22188477 |
---tccttgattacaatagcatgatcatacggtctgtgtggtggcaattcagatacctctgcaaacatttcaacatactctc |
22188399 |
T |
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