View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0936_low_9 (Length: 440)
Name: NF0936_low_9
Description: NF0936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0936_low_9 |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 306; Significance: 1e-172; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 98 - 411
Target Start/End: Complemental strand, 16803703 - 16803390
Alignment:
| Q |
98 |
gaggcatattcccaaggagatcttagtatagacactcttactttgaactctaataatgaccctcctatctcatttaaaaatattgtaataggatgcggcc |
197 |
Q |
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| T |
16803703 |
gaggcatattcccaaggagatcttagtatagacactcttactttgaactctaataatgacactcctatctcatttaaaaatattgtaataggatgcggcc |
16803604 |
T |
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| Q |
198 |
atagaaataagggtccacttgagggatatgtatccggaaatattggtcttggacgtggacctttgtcttttatatcccaattgaattcttcgattggtgg |
297 |
Q |
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| T |
16803603 |
atagaaataagggtccacttgagggatatgtatccggaaatattggtcttggacgtggacctttgtcttttatatcccaattgaattcttcgattggtgg |
16803504 |
T |
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| Q |
298 |
aaaattttcatattgtttggttccgttattttcaaatgaaggtatctcaggcaaactacacttttgagataaatcagtggtttctggtgttgggactgtc |
397 |
Q |
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| T |
16803503 |
aaaattttcatattgtttggttccgttattttcaaatgaaggtatctcaggcaaactacactttggagataaatcagtggtttctggtgttgggactgtc |
16803404 |
T |
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| Q |
398 |
tcaactcccataac |
411 |
Q |
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| T |
16803403 |
tcaactcccataac |
16803390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 104 - 410
Target Start/End: Original strand, 19573546 - 19573852
Alignment:
| Q |
104 |
tattcccaaggagatcttagtatagacactcttactttgaactctaataatgaccctcctatctcatttaaaaatattgtaataggatgcggccatagaa |
203 |
Q |
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| T |
19573546 |
tattcgcaaggagatcttggtgtcgacactcttactttgaactctaacaatggcactcctatctcattcaaaaatattgtgattggatgtgggcatagaa |
19573645 |
T |
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| Q |
204 |
ataagggtccacttgagggatatgtatccggaaatattggtcttggacgtggacctttgtcttttatatcccaattgaattcttcgattggtggaaaatt |
303 |
Q |
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| T |
19573646 |
atcaggggccattagaggggtatgtctcaggaaatattggccttgcacgcgggcctttgtcttttatatcccaattgaattcttcaattggtggaaaatt |
19573745 |
T |
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| Q |
304 |
ttcatattgtttggttccgttattttcaaatgaaggtatctcaggcaaactacacttttgagataaatcagtggtttctggtgttgggactgtctcaact |
403 |
Q |
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| T |
19573746 |
ttcttattgtctagttccattattttcgaaggaaaacgtttcaagcaaattacattttggagataaatcaacggtttctggacttggaactgtttcaact |
19573845 |
T |
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| Q |
404 |
cccataa |
410 |
Q |
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| T |
19573846 |
cccataa |
19573852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 240 - 316
Target Start/End: Complemental strand, 19649341 - 19649265
Alignment:
| Q |
240 |
ttggtcttggacgtggacctttgtcttttatatcccaattgaattcttcgattggtggaaaattttcatattgtttg |
316 |
Q |
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| T |
19649341 |
ttggtcttggaattggacctgtgtctcttacaacacaattgaaatcttcaattggtggtaaattttcttactgtttg |
19649265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 246 - 335
Target Start/End: Complemental strand, 15237 - 15148
Alignment:
| Q |
246 |
ttggacgtggacctttgtcttttatatcccaattgaattcttcgattggtggaaaattttcatattgtttggttccgttattttcaaatg |
335 |
Q |
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| T |
15237 |
ttggacgcggacctttatcgttaatatctcaattgagttcttcgattaatggaaaattttcttattgtctcgtgccattattttcaaatg |
15148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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