View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0937_high_3 (Length: 523)
Name: NF0937_high_3
Description: NF0937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0937_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 463; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 30 - 516
Target Start/End: Original strand, 35805441 - 35805927
Alignment:
| Q |
30 |
cctcaaacatgcattatatcatattaattttaagcttctcttttgtttttccttgcactacacccgaatattgtttcaattttctccaaatcattcatta |
129 |
Q |
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| T |
35805441 |
cctcaaacatgcattatatcatattaatttttagcttctcttttgtttttccttgcactacacccgaatattgtttcaattttctccaaatcattcatta |
35805540 |
T |
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| Q |
130 |
agttacatcaaataactttgtcaattctatcataatactaatatggatcgattccctttgcagatagttagatcaaaaccctaaatgatgaaattgaggg |
229 |
Q |
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| T |
35805541 |
agttacatcaaataactttgtcaattctatcataatactaatatggatcgattccctttgcagatagttagatcaaaaccctaaatgatgaaattgaggg |
35805640 |
T |
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| Q |
230 |
tggaagccaagggtccacggtggcagtggtgggggaattatgtaagcaccggtggtggtgaatagtacatatatctcatgagacatttgaaagcaaccct |
329 |
Q |
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| T |
35805641 |
tggaagccaagggtccacggtggcagtggtgggggaattatgtaagcaccggtggtggtgaatcgtacatatatctcatgagacatttgaaagcaaccct |
35805740 |
T |
|
| Q |
330 |
catggctaccttgagtggtcttcatgttgtggacaaggccagcaagtggtgttgtttaacttcaattctaactagcctcttaatttacaaactagcctct |
429 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
35805741 |
catggctaccttgagtggtcttcatgttgtggacaaggccaacaagtggtgttgtttcacttcaattctaactagcctcttaatttacaaactagcctct |
35805840 |
T |
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| Q |
430 |
taatttacattaataaattcatatgcaattgcgtggtggagatttatatttatcacaattttgatggtggtggtgtgatattgttgg |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |
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| T |
35805841 |
taatttacattaataaattcatatgcaattgcgtggtggagatttatatttatcacaattttgatggtggtggtatgattttgttgg |
35805927 |
T |
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