View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0937_high_4 (Length: 424)
Name: NF0937_high_4
Description: NF0937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0937_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 30 - 415
Target Start/End: Complemental strand, 18982145 - 18981745
Alignment:
| Q |
30 |
aggcagcggtccaattccggtaccaaagctaaagaagaggg-agcacaatacaaactccaaaacaagctactaaagtggtatagataagacgcctcaatt |
128 |
Q |
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| T |
18982145 |
aggcagtggtccaattccggtaccaaagctaaagaagaggggagcacaatacaaactccaaaacaagctacttaagtggtatagataagaggcctcaatt |
18982046 |
T |
|
| Q |
129 |
caatgttttatgaatcaacatgatataataaattgattttgtcacattaacactctaattaaa-------------gtggaggtttaagttagaaaccaa |
215 |
Q |
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| T |
18982045 |
caatgtttgatgaatcaacatgatataataaattgattttgtcaccttaacactctaattaaaattttattttagagtggaggtttaagttagaaaccaa |
18981946 |
T |
|
| Q |
216 |
caaaagaagataagaaaagattataaattcgtattgctttttgcctataataatgtaaaatcattaagataattgtaaat-aagtttatgcaataaattt |
314 |
Q |
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| T |
18981945 |
caaaagaagataagaaaagattataaattcgtattgcttttttcctataataatgtaaaatcattaagataattgtaaataaagtttatgcaataaattt |
18981846 |
T |
|
| Q |
315 |
tttgaaggggtctaaaaaatttctcaaagaaagtcaatgtaaagttgttgacgnnnnnnnncttcatataaatcaaatttgactaaaggagacagtataa |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
18981845 |
tttgaaggggtctaaaaaatttctcaaagaaagtcaatgtaaagttgttgacgtttttttccttcatataaatcaaatttgactaaaggagacagtataa |
18981746 |
T |
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| Q |
415 |
t |
415 |
Q |
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| T |
18981745 |
t |
18981745 |
T |
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