View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0937_low_11 (Length: 367)

Name: NF0937_low_11
Description: NF0937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0937_low_11
NF0937_low_11
[»] scaffold0364 (1 HSPs)
scaffold0364 (53-367)||(12156-12469)


Alignment Details
Target: scaffold0364 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: scaffold0364
Description:

Target: scaffold0364; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 53 - 367
Target Start/End: Original strand, 12156 - 12469
Alignment:
Q  53 caattaattggtgtgtctaacacattactaaattaaatcctgtggatttatctaatagaattttactgccacattgcttagaaacatatacattttccag 152  Q
    ||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  12156 caattaattggtgtgtc-aacacataactaaattaaatcttgtggatttatctaatagaattttactgccacattgcttaaaaacatatacattttccag 12254  T
Q  153 ctgtcaaggtctcgtatgaataaataagacacatcggtttatggggaagctcgcacatatcgtttggacaatcgttggcactaagacatctaataaacgc 252  Q
    ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  12255 ctgtcaaggtctcatatgaataaataagacacatcggtttctggggaagctcgcacatatcgtttggacaatcgttggcactaagacatctaataaatgc 12354  T
Q  253 tgtaatgaaaaaatagaataaaattatgttacaaatatgggagaaaatattatgtatgaactagctaaataaatttgaaaagaataagaattgcttacgt 352  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12355 tgtattgaaaaaatagaataaaattatgttacaaatatgggagaaaatattatgtatgaactagctaaataaatttgaaaagaataagaattgcttacgt 12454  T
Q  353 tcaaagttcattgca 367  Q
    |||||||||||||||    
T  12455 tcaaagttcattgca 12469  T

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