View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0937_low_12 (Length: 345)
Name: NF0937_low_12
Description: NF0937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0937_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 11 - 261
Target Start/End: Original strand, 31792577 - 31792827
Alignment:
| Q |
11 |
cataggcaagtgaaagaattgacgccaagtttccctagctttgtccatcaaatcatgactcactccatggtttacaatttggaagaaaccccaatcacga |
110 |
Q |
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| T |
31792577 |
cataggcaagtgaaagaattgacgccaagtttccctagctttgtccatcaaatcaggactcactccatggtttacaatttggaagaaaccccaatcacga |
31792676 |
T |
|
| Q |
111 |
caagcatcagaaatttgcttaaggattgaagcatgaacatcaaggtcatcaccatttaaccctccaaggtctatgattggaatattgatatcatcataag |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31792677 |
caagcatcagaaatttgcttaaggattgaagcatgaacatcaaggtcatcaccatttaaccctccaaggtctatgattggaatattgatatcatcataag |
31792776 |
T |
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| Q |
211 |
aagaagtgtctacaattggcctatcagttggaggcttgatatacctatcag |
261 |
Q |
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| T |
31792777 |
aagaagtgtctacaattggcctatcagttggaggcttgatatacctatcag |
31792827 |
T |
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Back To:
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Target: chr5 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 11 - 130
Target Start/End: Original strand, 35617382 - 35617501
Alignment:
| Q |
11 |
cataggcaagtgaaagaattgacgccaagtttccctagctttgtccatcaaatcatgactcactccatggtttacaatttggaagaaaccccaatcacga |
110 |
Q |
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||||||||||||||| |||||||||||||||||| ||||| |||||||||||||| || || |||||||| |||||||| ||||| ||||| || | |
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| T |
35617382 |
cataggcaagtgaaaaaattgacgccaagtttccttagctaaatccatcaaatcatggctaacaccatggttaacaatttgaaagaatccccactcttta |
35617481 |
T |
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| Q |
111 |
caagcatcagaaatttgctt |
130 |
Q |
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||||| ||||| |||||||| |
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| T |
35617482 |
caagcctcagagatttgctt |
35617501 |
T |
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