View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0937_low_13 (Length: 336)
Name: NF0937_low_13
Description: NF0937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0937_low_13 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 30 - 336
Target Start/End: Complemental strand, 4583499 - 4583193
Alignment:
| Q |
30 |
caatcagctggatttcccttactactcccactcatattttacttcaaaccacatgatcaattcacaaacatgttcagcaatgataattcctccataatca |
129 |
Q |
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| T |
4583499 |
caatcagctggatttcccttactactcccactcatattttacttcaaaccacatgatcaattcaaaaacatgttcagcaatgataattcctccataatca |
4583400 |
T |
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| Q |
130 |
gaccaaannnnnnngccctatacttaggttttggtttacttgtagaaggggtttacttgatgtattcatatggacttgtatatcttcctctttccacttt |
229 |
Q |
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| T |
4583399 |
aaccaaatttttttgccctatacttaggttttggtttacttgtagaaggggtttacttgatgtattcatatgggcttgtatatcttcctctttccacttt |
4583300 |
T |
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| Q |
230 |
ttctctaatatgctcaactgaattagccttcaatgcattattctctttcttcttgaattctcaaaggtttacagcattaatattcaattctgtattcctc |
329 |
Q |
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| T |
4583299 |
ttctctaatatgctcaactgaattagccttcaatgcattattctctttcttcttgaattctcaaaggtttacagcattaatattcaattctgtattcctc |
4583200 |
T |
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| Q |
330 |
cttacca |
336 |
Q |
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| T |
4583199 |
cttacca |
4583193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 186 - 323
Target Start/End: Original strand, 40838761 - 40838898
Alignment:
| Q |
186 |
ttgatgtattcatatggacttgtatatcttcctctttccactttttctctaatatgctcaactgaattagccttcaatgcattattctctttcttcttga |
285 |
Q |
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| T |
40838761 |
ttgatgtattccaatggacttctatatctttcactttccacctattctttactatgtgcaacacaattagccttcaatgcagtattttcttatttcctta |
40838860 |
T |
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| Q |
286 |
attctcaaaggtttacagcattaatattcaattctgta |
323 |
Q |
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| T |
40838861 |
attcccaaaagttcacagcattcatattcaattctgta |
40838898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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