View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0937_low_19 (Length: 298)
Name: NF0937_low_19
Description: NF0937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0937_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 119; Significance: 8e-61; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 37196746 - 37196620
Alignment:
| Q |
1 |
ccaccaccttggacattgtcaatgctggaaagtgagacaatgatcaaaatagctaacaaaaacaaacgtacagaggccatttgagtgaggaaatgtgtat |
100 |
Q |
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| T |
37196746 |
ccaccaccttggacattgtcaatgctggaaagtgacacaatgatcaaaatagctaacaaaaacaaacggacagaggccatttgagtgaggaaatgtgtat |
37196647 |
T |
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| Q |
101 |
ttttggacccaacaaatttgatagata |
127 |
Q |
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| T |
37196646 |
ttttggacccaacaaatttgatagata |
37196620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 119 - 204
Target Start/End: Complemental strand, 37196598 - 37196513
Alignment:
| Q |
119 |
tgatagataattgcagtaagggagaagagtgaagacaagtgacaacataagagttggttcttgtgtttttatagtacaacttaaac |
204 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37196598 |
tgatagataattgtagtaagggagaagagtgaagacaagtgacaacataagagttggttcttgtgtttttatagtacaacttaaac |
37196513 |
T |
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