View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0937_low_2 (Length: 647)
Name: NF0937_low_2
Description: NF0937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0937_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 20 - 421
Target Start/End: Original strand, 653099 - 653501
Alignment:
| Q |
20 |
acaccaaaacgaatcaaagtaaactcaatttgataaatggagccaagattacaaaagaaattgtttatttcccgacctcgtgttgaacttgtttgtcaac |
119 |
Q |
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| T |
653099 |
acaccaaaacgattcaaagtaaactcaatttgataaatggggccaagattacaaaagaaattgtttatttcccgacctcgtgttgaacttgtttgtcaac |
653198 |
T |
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| Q |
120 |
taaagaaatgagtttgatcaatcatttaataagctcaacaatatttcacaaacaactatggacnnnnnnnccctcacttacggaccaatacatttttctc |
219 |
Q |
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| T |
653199 |
taaagaaatgagtttgatcaatcatttaataagctcaacaatatttcataaacaactatggattttttttccctcacttacggaccaatacatttttctt |
653298 |
T |
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| Q |
220 |
ttacatttattgaaa-gggttaatcaaacaagaaaagaagctaagcgtttgataaattgtttagccccatcagtttcaggtttgaagatctgaaaaccat |
318 |
Q |
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| T |
653299 |
taacatttattgaaaagggttaatcaaacaagaaaagaagctaagcgtttgataaattgtttagccccatcagtttcaggtttgaagatctgaaaaccat |
653398 |
T |
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| Q |
319 |
gttcctcatctccagcttcaaacagttcaagttgaccttgccacccactttctctaacagactcatagtacaaaacatctctgtctctaaactcatcctt |
418 |
Q |
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| T |
653399 |
gttcctcatctccagcttcaaacagttcaagttgaccttgccacccactttctttaacagactcatagtacaaaacatctctgtctctaaactcatcctt |
653498 |
T |
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| Q |
419 |
gtc |
421 |
Q |
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| T |
653499 |
gtc |
653501 |
T |
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Back To:
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Target: chr8 (Bit Score: 122; Significance: 3e-62; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 431 - 552
Target Start/End: Original strand, 32815570 - 32815691
Alignment:
| Q |
431 |
gaataaagaaacgtaaaaaagagttagttaataataataccaatctctaagtcatgccatggatgagcagcagcatctttcttatcagccatggaagaaa |
530 |
Q |
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| T |
32815570 |
gaataaagaaacgtaaaaaagagttagttaataataataccaatctctaagtcatgccatggatgagcagcagcatctttcttatcagccatggaagaaa |
32815669 |
T |
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| Q |
531 |
gtattctttcattcaacgcaac |
552 |
Q |
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| T |
32815670 |
gtattctttcattcaacgcaac |
32815691 |
T |
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