View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0937_low_23 (Length: 288)
Name: NF0937_low_23
Description: NF0937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0937_low_23 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 77 - 288
Target Start/End: Complemental strand, 34583488 - 34583277
Alignment:
| Q |
77 |
gtgcaaggtatttatggggaagcaaactaataagcgataagaaagtcttctagcatcggacgccacggaaaacagctcaattgagtcatttccctcacaa |
176 |
Q |
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| T |
34583488 |
gtgcaaggtatttatggggaagcaaactaataagtgattcgaaagtcttctagcatcggacgccacggaaaacagctcaattgagtcatttccctcacaa |
34583389 |
T |
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| Q |
177 |
acaatgtttctagctttccaattccaccaaatgccagctagaaatatttttacagcaggaccatttgagattcatgttactaaagaagctgacatcaata |
276 |
Q |
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| T |
34583388 |
acaatgtttctagctttccaattccaccaaatgccagctagaaatatatttgcagcaggaccatttgagattcatgttactaaagaagttgacatcaata |
34583289 |
T |
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| Q |
277 |
aatcctaaagcc |
288 |
Q |
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| T |
34583288 |
aatcctaaagcc |
34583277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 92 - 207
Target Start/End: Original strand, 13753413 - 13753528
Alignment:
| Q |
92 |
ggggaagcaaactaataagcgataagaaagtcttctagcatcggacgccacggaaaacagctcaattgagtcatttccctcacaaacaatgtttctagct |
191 |
Q |
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||||||||||||| ||||| || | |||||||||||||| || ||| ||||||||||||||||||| |||||||||||| |||||||||||||||||||| |
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| T |
13753413 |
ggggaagcaaactgataagagagacgaaagtcttctagcctcagacaccacggaaaacagctcaatagagtcatttcccacacaaacaatgtttctagct |
13753512 |
T |
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| Q |
192 |
ttccaattccaccaaa |
207 |
Q |
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| T |
13753513 |
ttccaattccaccaaa |
13753528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 283
Target Start/End: Original strand, 13753590 - 13753627
Alignment:
| Q |
246 |
attcatgttactaaagaagctgacatcaataaatccta |
283 |
Q |
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| T |
13753590 |
attcatgttactaaagaagttgacattaataaatccta |
13753627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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