View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0937_low_24 (Length: 283)
Name: NF0937_low_24
Description: NF0937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0937_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 41 - 220
Target Start/End: Complemental strand, 33076305 - 33076126
Alignment:
| Q |
41 |
agcataggattcatgtgcactattaataagaagcaagaagcaaagtatttcattcagcacttacacatcaaaatcagaacttgtccataatgtttttacg |
140 |
Q |
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| T |
33076305 |
agcattggattcatgtggactattaataagaagcaagaagcaaaatatttcattcagcacttacacatcaaaatcaaaacttgtccacaatgtttttacg |
33076206 |
T |
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| Q |
141 |
attttttctcctcactctcatgttcactgtcacacaagcttacatatatgactgtatgaccttggcactacagtggggac |
220 |
Q |
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| T |
33076205 |
attttttctcctcactctcatgttcactgtcacacaagcttacatatatgactatatgaccttggcactacagtagggac |
33076126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 39 - 192
Target Start/End: Complemental strand, 33071713 - 33071553
Alignment:
| Q |
39 |
gtagcataggattcatgtgcactattaataagaagcaagaagcaa-------agtatttcattcagcacttacacatcaaaatcagaacttgtccataat |
131 |
Q |
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||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||| |
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| T |
33071713 |
gtagcattggattcatgtggactattaataagaagcaagaagcaagaagcaaagtatttcattcagcacttacacatcaaaatcaaaacttgtccacaat |
33071614 |
T |
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| Q |
132 |
gtttttacgattttttctcctcactctcatgttcactgtcacacaagcttacatatatgac |
192 |
Q |
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| T |
33071613 |
gtttttacgattttttctcctcactctcatgttcactgtcacacaagcttacatatatgac |
33071553 |
T |
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