View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0937_low_3 (Length: 647)
Name: NF0937_low_3
Description: NF0937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0937_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 16 - 421
Target Start/End: Original strand, 653095 - 653501
Alignment:
| Q |
16 |
ataaacaccaaaacgaatcaaagtaaactcaatttgataaatggagccaagattacaaaagaaattgtttatttcccgacctcgtgttgaacttgtttgt |
115 |
Q |
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| T |
653095 |
ataaacaccaaaacgattcaaagtaaactcaatttgataaatggggccaagattacaaaagaaattgtttatttcccgacctcgtgttgaacttgtttgt |
653194 |
T |
|
| Q |
116 |
caactaaagaaatgagtttgatcaatcatttaataagctcaacaatatttcacaaacaactatggacnnnnnnnccctcacttacggaccaatacatttt |
215 |
Q |
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| T |
653195 |
caactaaagaaatgagtttgatcaatcatttaataagctcaacaatatttcataaacaactatggattttttttccctcacttacggaccaatacatttt |
653294 |
T |
|
| Q |
216 |
tctcttacatttattgaaa-gggttaatcaaacaagaaaagaagctaagcgtttgataaattgtttagccccatcagtttcaggtttgaagatctgaaaa |
314 |
Q |
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| T |
653295 |
tctttaacatttattgaaaagggttaatcaaacaagaaaagaagctaagcgtttgataaattgtttagccccatcagtttcaggtttgaagatctgaaaa |
653394 |
T |
|
| Q |
315 |
ccatgttcctcatctccagcttcaaacagttcaagttgaccttgccacccactttctctaacagactcatagtacaaaacatctctgtctctaaactcat |
414 |
Q |
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| T |
653395 |
ccatgttcctcatctccagcttcaaacagttcaagttgaccttgccacccactttctttaacagactcatagtacaaaacatctctgtctctaaactcat |
653494 |
T |
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| Q |
415 |
ccttgtc |
421 |
Q |
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| T |
653495 |
ccttgtc |
653501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 122; Significance: 3e-62; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 431 - 552
Target Start/End: Original strand, 32815570 - 32815691
Alignment:
| Q |
431 |
gaataaagaaacgtaaaaaagagttagttaataataataccaatctctaagtcatgccatggatgagcagcagcatctttcttatcagccatggaagaaa |
530 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32815570 |
gaataaagaaacgtaaaaaagagttagttaataataataccaatctctaagtcatgccatggatgagcagcagcatctttcttatcagccatggaagaaa |
32815669 |
T |
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| Q |
531 |
gtattctttcattcaacgcaac |
552 |
Q |
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| T |
32815670 |
gtattctttcattcaacgcaac |
32815691 |
T |
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