View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0937_low_30 (Length: 251)
Name: NF0937_low_30
Description: NF0937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0937_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 71 - 225
Target Start/End: Original strand, 12794847 - 12794996
Alignment:
| Q |
71 |
ttgttactggtttacgctgtttgcgtcttgtgctatctatgatttatgtgatcaagtactgttatgttgtgttgtgtcttatcgtacttatctttctact |
170 |
Q |
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| T |
12794847 |
ttgttattggtttatgttatttgcatcttgttctatttatgattt--gtgattaagtactgttaagttgtgttgtgtccta-----cttatctttctact |
12794939 |
T |
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| Q |
171 |
tttatttttgaaactaattcaaac--atgcttcatgccctagttatgtcatgataca |
225 |
Q |
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| T |
12794940 |
tttatttttgaaattaattcaaacatatacttcatgccctggttatgtcattataca |
12794996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 117 - 225
Target Start/End: Original strand, 12732090 - 12732195
Alignment:
| Q |
117 |
tgtgatcaagtactgttatgttgtgttgtgtcttatcgtacttatctttctacttttatttttgaaactaattcaaac--atgcttcatgccctagttat |
214 |
Q |
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| T |
12732090 |
tgtgattaagtactgttaagttgtgttgtgtccta-----cttatctttctacttttatttttgaaattaattcaaacatatgcttcatgccctggttat |
12732184 |
T |
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| Q |
215 |
gtcatgataca |
225 |
Q |
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| T |
12732185 |
gtcattataca |
12732195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 12794751 - 12794811
Alignment:
| Q |
1 |
gcttcatagatgatggtatatattctatgttgttgtactatgagtagaatcttgtggcatc |
61 |
Q |
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| T |
12794751 |
gcttcatagatgattgtattaattctatgttgttgtactatgagtagaatcttgtggcatc |
12794811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 12731950 - 12732010
Alignment:
| Q |
1 |
gcttcatagatgatggtatatattctatgttgttgtactatgagtagaatcttgtggcatc |
61 |
Q |
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|||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||| |
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| T |
12731950 |
gcttcatagatgattgtattaattctatgttgttgtactatgagtagaatcttatggcatc |
12732010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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