View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0937_low_35 (Length: 229)

Name: NF0937_low_35
Description: NF0937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0937_low_35
NF0937_low_35
[»] chr3 (20 HSPs)
chr3 (5-142)||(44228985-44229122)
chr3 (5-125)||(12264929-12265049)
chr3 (11-136)||(11986299-11986424)
chr3 (79-142)||(54651531-54651594)
chr3 (5-128)||(18897132-18897255)
chr3 (5-127)||(1467873-1467995)
chr3 (5-127)||(49232436-49232558)
chr3 (5-114)||(47984650-47984759)
chr3 (5-114)||(48003224-48003333)
chr3 (5-114)||(47993937-47994046)
chr3 (5-114)||(48012510-48012619)
chr3 (9-144)||(5228317-5228452)
chr3 (5-136)||(15859156-15859287)
chr3 (5-122)||(12902229-12902346)
chr3 (5-142)||(15468459-15468596)
chr3 (5-127)||(25058739-25058861)
chr3 (5-122)||(17912627-17912744)
chr3 (5-142)||(22275209-22275346)
chr3 (52-136)||(15936759-15936843)
chr3 (52-136)||(15938601-15938685)
[»] chr2 (17 HSPs)
chr2 (5-142)||(21141895-21142032)
chr2 (5-127)||(12728392-12728514)
chr2 (5-127)||(34824475-34824597)
chr2 (5-58)||(5888832-5888885)
chr2 (5-136)||(24341521-24341652)
chr2 (5-127)||(11231472-11231594)
chr2 (5-142)||(23778164-23778301)
chr2 (5-127)||(16935593-16935715)
chr2 (5-127)||(17006253-17006375)
chr2 (5-107)||(22513339-22513441)
chr2 (5-107)||(28775961-28776063)
chr2 (5-58)||(23774137-23774190)
chr2 (5-107)||(24685935-24686037)
chr2 (5-136)||(19794836-19794967)
chr2 (5-136)||(25265522-25265653)
chr2 (5-136)||(36982573-36982704)
chr2 (5-60)||(22138158-22138214)
[»] scaffold0191 (1 HSPs)
scaffold0191 (5-142)||(7575-7712)
[»] chr4 (13 HSPs)
chr4 (5-142)||(17145776-17145913)
chr4 (5-142)||(8374508-8374645)
chr4 (5-142)||(18248218-18248355)
chr4 (5-142)||(15287364-15287501)
chr4 (5-142)||(15294473-15294610)
chr4 (5-136)||(15675221-15675352)
chr4 (5-142)||(31115629-31115766)
chr4 (5-127)||(19020486-19020608)
chr4 (5-58)||(22352249-22352302)
chr4 (5-58)||(22738269-22738322)
chr4 (5-58)||(26339020-26339073)
chr4 (83-136)||(10104382-10104435)
chr4 (5-127)||(18168970-18169092)
[»] chr5 (17 HSPs)
chr5 (5-142)||(11212184-11212321)
chr5 (5-125)||(35791235-35791355)
chr5 (5-128)||(32950693-32950816)
chr5 (5-136)||(22053965-22054096)
chr5 (5-127)||(7425324-7425446)
chr5 (5-135)||(18531200-18531330)
chr5 (5-127)||(22883218-22883340)
chr5 (5-127)||(1219654-1219776)
chr5 (5-107)||(35582036-35582138)
chr5 (5-107)||(36989924-36990026)
chr5 (5-107)||(21932535-21932637)
chr5 (5-107)||(21938705-21938807)
chr5 (5-58)||(23328558-23328611)
chr5 (7-58)||(24616165-24616216)
chr5 (7-58)||(24712541-24712592)
chr5 (7-58)||(24745559-24745610)
chr5 (5-142)||(17471707-17471844)
[»] scaffold0066 (3 HSPs)
scaffold0066 (5-138)||(54416-54549)
scaffold0066 (50-138)||(45075-45163)
scaffold0066 (5-71)||(45011-45077)
[»] chr8 (9 HSPs)
chr8 (5-125)||(16195230-16195350)
chr8 (5-127)||(13662399-13662521)
chr8 (5-127)||(15319293-15319415)
chr8 (5-127)||(15499662-15499784)
chr8 (5-127)||(22006392-22006514)
chr8 (5-127)||(22088928-22089050)
chr8 (5-107)||(271514-271616)
chr8 (5-107)||(644304-644406)
chr8 (5-107)||(830039-830141)
[»] scaffold0012 (1 HSPs)
scaffold0012 (5-141)||(34278-34414)
[»] scaffold0084 (1 HSPs)
scaffold0084 (22-128)||(56240-56346)
[»] scaffold0025 (1 HSPs)
scaffold0025 (5-136)||(8849-8980)
[»] chr6 (15 HSPs)
chr6 (5-142)||(1556005-1556142)
chr6 (5-127)||(19610018-19610140)
chr6 (5-136)||(27740838-27740969)
chr6 (5-127)||(16376507-16376629)
chr6 (5-127)||(16383831-16383953)
chr6 (5-127)||(16556273-16556395)
chr6 (5-127)||(16632829-16632951)
chr6 (5-107)||(22225892-22225994)
chr6 (5-107)||(10488699-10488801)
chr6 (83-138)||(29665951-29666006)
chr6 (5-60)||(29665892-29665947)
chr6 (5-136)||(35009571-35009702)
chr6 (5-58)||(29869978-29870031)
chr6 (22-136)||(23153464-23153578)
chr6 (5-65)||(33314414-33314474)
[»] scaffold0467 (1 HSPs)
scaffold0467 (5-142)||(10458-10595)
[»] scaffold0383 (1 HSPs)
scaffold0383 (5-142)||(2392-2529)
[»] chr7 (14 HSPs)
chr7 (5-142)||(15760233-15760370)
chr7 (5-58)||(16418498-16418551)
chr7 (5-127)||(15950925-15951047)
chr7 (29-136)||(13321038-13321146)
chr7 (5-107)||(7822728-7822830)
chr7 (5-107)||(7830039-7830141)
chr7 (5-107)||(27101791-27101893)
chr7 (5-107)||(27109139-27109241)
chr7 (5-107)||(27176433-27176535)
chr7 (5-107)||(38783883-38783985)
chr7 (5-58)||(10000572-10000625)
chr7 (5-43)||(15852456-15852494)
chr7 (5-135)||(47481164-47481294)
chr7 (22-136)||(11580871-11580985)
[»] chr1 (7 HSPs)
chr1 (5-58)||(20254312-20254365)
chr1 (10-127)||(46523394-46523511)
chr1 (5-127)||(38055225-38055347)
chr1 (5-107)||(17004638-17004740)
chr1 (5-127)||(18059892-18060014)
chr1 (5-58)||(22035448-22035501)
chr1 (5-58)||(7641136-7641189)
[»] scaffold0003 (1 HSPs)
scaffold0003 (5-58)||(7210-7263)
[»] scaffold0195 (2 HSPs)
scaffold0195 (5-136)||(19206-19337)
scaffold0195 (5-136)||(21290-21421)
[»] scaffold0107 (2 HSPs)
scaffold0107 (5-127)||(39646-39768)
scaffold0107 (5-107)||(31309-31411)
[»] scaffold0076 (1 HSPs)
scaffold0076 (5-107)||(39103-39205)
[»] scaffold0023 (1 HSPs)
scaffold0023 (5-127)||(154141-154263)
[»] scaffold1666 (1 HSPs)
scaffold1666 (5-142)||(115-252)
[»] scaffold0183 (1 HSPs)
scaffold0183 (5-58)||(6598-6651)
[»] scaffold0155 (1 HSPs)
scaffold0155 (5-58)||(23951-24004)
[»] scaffold0075 (1 HSPs)
scaffold0075 (5-128)||(34600-34724)
[»] scaffold0132 (1 HSPs)
scaffold0132 (5-136)||(13506-13637)
[»] scaffold0213 (1 HSPs)
scaffold0213 (5-127)||(29162-29284)
[»] scaffold0125 (1 HSPs)
scaffold0125 (5-135)||(41648-41778)
[»] scaffold0761 (1 HSPs)
scaffold0761 (5-142)||(1694-1831)
[»] scaffold0529 (1 HSPs)
scaffold0529 (84-136)||(3042-3094)
[»] scaffold0026 (1 HSPs)
scaffold0026 (5-136)||(107747-107878)
[»] scaffold0151 (1 HSPs)
scaffold0151 (84-133)||(22542-22591)
[»] scaffold0390 (1 HSPs)
scaffold0390 (5-60)||(16034-16090)


Alignment Details
Target: chr3 (Bit Score: 130; Significance: 2e-67; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 5 - 142
Target Start/End: Original strand, 44228985 - 44229122
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacatcagttaatagcaataaccttaatggaacatgaatcacatctcattt 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44228985 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacatcagttaatagcaataaccttaatggaacatgaatcacatctcattt 44229084  T
Q  105 caacaacaacatatcaaaattcactaattgagtataat 142  Q
     |||||||||||||||| ||||||||||||||||||||    
T  44229085 taacaacaacatatcaagattcactaattgagtataat 44229122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 5 - 125
Target Start/End: Complemental strand, 12265049 - 12264929
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacatcagttaatagcaataaccttaatggaacatgaatcacatctcattt 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||    
T  12265049 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacatcagttaatagcaacaacatcaatggaacatgaatcacatctcattt 12264950  T
Q  105 caacaacaacatatcaaaatt 125  Q
    |||||||||||||||||||||    
T  12264949 caacaacaacatatcaaaatt 12264929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 11 - 136
Target Start/End: Complemental strand, 11986424 - 11986299
Alignment:
Q  11 caatccataattatgtatacccaagtcataattcacccacaacaacatcagttaatagcaataaccttaatggaacatgaatcacatctcatttcaacaa 110  Q
    |||||||| | |||| ||||||||||||| ||||||||||||||||||||||||||||||  ||| | ||||||||||||||||||| || |||||||||    
T  11986424 caatccatgaatatgcatacccaagtcatgattcacccacaacaacatcagttaatagcatcaacatcaatggaacatgaatcacatatcttttcaacaa 11986325  T
Q  111 caacatatcaaaattcactaattgag 136  Q
    |||| || |||||||||||| |||||    
T  11986324 caacttagcaaaattcactatttgag 11986299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 79 - 142
Target Start/End: Original strand, 54651531 - 54651594
Alignment:
Q  79 aatggaacatgaatcacatctcatttcaacaacaacatatcaaaattcactaattgagtataat 142  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  54651531 aatggaacatgaattacatctcatttcaacaacaacatatcaaaattcaccaattgagtataat 54651594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 5 - 128
Target Start/End: Complemental strand, 18897255 - 18897132
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacatcagttaatagcaataaccttaatggaacatgaatcacatctcattt 104  Q
    ||||||||||||| ||||| |||||||||| |||| |||||| ||||| | |||||||||| |  || ||| | ||||||| |||||| |||||||||||    
T  18897255 catcatcaatccacaattaagtatacccaaatcatgattcactcacaatagcatcagttaacaataacaacatcaatggaatatgaattacatctcattt 18897156  T
Q  105 caacaacaacatatcaaaattcac 128  Q
    |||  | ||||||||||| |||||    
T  18897155 caatcaaaacatatcaaatttcac 18897132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 5 - 127
Target Start/End: Complemental strand, 1467995 - 1467873
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacatcagttaatagcaataaccttaatggaacatgaatcacatctcattt 104  Q
    ||||||||||||| ||||| |||||||||| |||||||||||  |||| | |||||||||| |  ||  || ||||||||| |||||||||||||| |||    
T  1467995 catcatcaatccacaattaagtatacccaaatcataattcacttacaatagcatcagttaacaataaccacattaatggaatatgaatcacatctctttt 1467896  T
Q  105 caacaacaacatatcaaaattca 127  Q
    |||  | ||||||||||| ||||    
T  1467895 caatcaaaacatatcaaatttca 1467873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 5 - 127
Target Start/End: Original strand, 49232436 - 49232558
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacatcagttaatagcaataaccttaatggaacatgaatcacatctcattt 104  Q
    ||||||||||||| ||||| |||||||||| |||||||||||  |||| | |||||||||| |  ||  || | ||||||| ||||||||||||||||||    
T  49232436 catcatcaatccacaattaagtatacccaaatcataattcacttacaatagcatcagttaacaataaccacatcaatggaatatgaatcacatctcattt 49232535  T
Q  105 caacaacaacatatcaaaattca 127  Q
    |||  | ||||||||||| ||||    
T  49232536 caatcaaaacatatcaaatttca 49232558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 5 - 114
Target Start/End: Original strand, 47984650 - 47984759
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacatcagttaatagcaataaccttaatggaacatgaatcacatctcattt 104  Q
    |||||||||| ||| | |||| ||||||||||||| ||||| | |||||||||||| |||| | ||| ||| | ||| ||||||||||||||||||| |     
T  47984650 catcatcaattcatgaatatgcatacccaagtcatgattcatcaacaacaacatcaattaacaacaaaaacatcaattgaacatgaatcacatctcaatc 47984749  T
Q  105 caacaacaac 114  Q
    ||||||||||    
T  47984750 caacaacaac 47984759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 5 - 114
Target Start/End: Original strand, 48003224 - 48003333
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacatcagttaatagcaataaccttaatggaacatgaatcacatctcattt 104  Q
    |||||||||| ||| | |||| ||||||||||||| ||||| | |||||||||||| |||| | ||| ||| | ||| ||||||||||||||||||| |     
T  48003224 catcatcaattcatgaatatgcatacccaagtcatgattcatcaacaacaacatcaattaacaacaaaaacatcaattgaacatgaatcacatctcaatc 48003323  T
Q  105 caacaacaac 114  Q
    ||||||||||    
T  48003324 caacaacaac 48003333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 5 - 114
Target Start/End: Original strand, 47993937 - 47994046
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacatcagttaatagcaataaccttaatggaacatgaatcacatctcattt 104  Q
    |||||||||| ||| | |||| ||||||||||||| ||||| | ||||||| |||| |||| | ||| ||| | ||| ||||||||||||||||||| |     
T  47993937 catcatcaattcatgaatatgcatacccaagtcatgattcatcaacaacaaaatcaattaacaacaaaaacatcaattgaacatgaatcacatctcaatc 47994036  T
Q  105 caacaacaac 114  Q
    ||||||||||    
T  47994037 caacaacaac 47994046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 5 - 114
Target Start/End: Original strand, 48012510 - 48012619
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacatcagttaatagcaataaccttaatggaacatgaatcacatctcattt 104  Q
    |||||||||| ||| | |||| ||||||||||||| ||||| | ||||||| |||| |||| | ||| ||| | ||| ||||||||||||||||||| |     
T  48012510 catcatcaattcatgaatatgcatacccaagtcatgattcatcaacaacaaaatcaattaacaacaaaaacatcaattgaacatgaatcacatctcaatc 48012609  T
Q  105 caacaacaac 114  Q
    ||||||||||    
T  48012610 caacaacaac 48012619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 9 - 144
Target Start/End: Original strand, 5228317 - 5228452
Alignment:
Q  9 atcaatccataattatgtatacccaagtcataattcacccacaacaacatcagttaatagcaataaccttaatggaacatgaatcacatctcatttcaac 108  Q
    |||||| || ||||| |||||||||| |||| |||||| ||||| | |||||||||| |  || ||| | ||||||| |||||| ||| ||||||||||     
T  5228317 atcaattcacaattaagtatacccaaatcatgattcactcacaatagcatcagttaacaataacaacatcaatggaatatgaattacacctcatttcaat 5228416  T
Q  109 aacaacatatcaaaattcactaattgagtataatct 144  Q
     | ||||||||||| ||||  |||| ||||||||||    
T  5228417 caaaacatatcaaatttcatcaattaagtataatct 5228452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 5 - 136
Target Start/End: Complemental strand, 15859287 - 15859156
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacatcagttaatagcaataaccttaatggaacatgaatcacatctcattt 104  Q
    |||||||||| ||| | |||| |||||||||  || ||||| | || ||||||||| |||| ||| ||||| | ||| ||||| |||||| | |||| ||    
T  15859287 catcatcaattcatgaatatgcatacccaagcaatgattcatcaaccacaacatcaattaacagccataacatcaattgaacaagaatcataactcaatt 15859188  T
Q  105 caacaacaacatatcaaaattcactaattgag 136  Q
    |||||||||| || |||||||||| |||||||    
T  15859187 caacaacaacttagcaaaattcaccaattgag 15859156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 122
Target Start/End: Complemental strand, 12902346 - 12902229
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacatcagttaatagcaataaccttaatggaacatgaatcacatctcattt 104  Q
    |||||| |||||| ||||| ||||| |||| |||| |||||| ||||| |  |||||||||||  || ||| | ||||||| |||||| |||||||||||    
T  12902346 catcattaatccacaattaagtatatccaaatcatgattcactcacaatagtatcagttaataataacaacatcaatggaatatgaattacatctcattt 12902247  T
Q  105 caacaacaacatatcaaa 122  Q
    |||  | |||||||||||    
T  12902246 caatcaaaacatatcaaa 12902229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 142
Target Start/End: Complemental strand, 15468596 - 15468459
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacatcagttaatagcaataaccttaatggaacatgaatcacatctcattt 104  Q
    |||||||||| ||| | |||| |||||||||  || |||||  ||||| |||||||||||| |  || ||| | ||||||| |||||| |||||||||||    
T  15468596 catcatcaattcatgaatatgcatacccaagcaatgattcattcacaataacatcagttaacaataacaacatcaatggaatatgaattacatctcattt 15468497  T
Q  105 caacaacaacatatcaaaattcactaattgagtataat 142  Q
    |||  | ||||||||||| ||||  |||| ||||||||    
T  15468496 caatcaaaacatatcaaatttcatcaattaagtataat 15468459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 5 - 127
Target Start/End: Original strand, 25058739 - 25058861
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacatcagttaatagcaataaccttaatggaacatgaatcacatctcattt 104  Q
    |||||||||| || ||||| |||||| ||| |||| |||||| ||||| | ||| |||||| |  || ||| | ||||||| |||||| |||||||||||    
T  25058739 catcatcaattcacaattaagtatactcaaatcatgattcactcacaatagcataagttaacaataacaacatcaatggaatatgaattacatctcattt 25058838  T
Q  105 caacaacaacatatcaaaattca 127  Q
    |||  | ||||||||||| ||||    
T  25058839 caatcaaaacatatcaaatttca 25058861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 122
Target Start/End: Complemental strand, 17912744 - 17912627
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacatcagttaatagcaataaccttaatggaacatgaatcacatctcattt 104  Q
    |||||||||| ||| | |||| |||||||||   | ||||| | |||||||||||| |||| | ||||||| |  || |||||||||||| | |||| ||    
T  17912744 catcatcaattcatgaatatgcatacccaagcagtgattcatcaacaacaacatcaattaacaacaataacatcgattgaacatgaatcatagctcaatt 17912645  T
Q  105 caacaacaacatatcaaa 122  Q
    |||| |||||||||||||    
T  17912644 caactacaacatatcaaa 17912627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 142
Target Start/End: Original strand, 22275209 - 22275346
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacatcagttaatagcaataaccttaatggaacatgaatcacatctcattt 104  Q
    |||||||||| ||| | |||| ||||| |||  || |||||  ||||| |||||||||||| |  || ||| | ||||||| |||||| |||||||||||    
T  22275209 catcatcaattcatgaatatgcatacctaagcaatgattcattcacaataacatcagttaacaataacaacatcaatggaatatgaattacatctcattt 22275308  T
Q  105 caacaacaacatatcaaaattcactaattgagtataat 142  Q
    |||  | ||||||||||| ||||  |||| ||||||||    
T  22275309 caatcaaaacatatcaaatttcatcaattaagtataat 22275346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 136
Target Start/End: Complemental strand, 15936843 - 15936759
Alignment:
Q  52 acaacatcagttaatagcaataaccttaatggaacatgaatcacatctcatttcaacaacaacatatcaaaattcactaattgag 136  Q
    ||||||||| |||| | | ||||| | ||| ||||| |||||| ||||||  | ||||||||| ||||||||||||| |||||||    
T  15936843 acaacatcaattaacatccataacatcaattgaacaagaatcaaatctcaaattaacaacaacttatcaaaattcaccaattgag 15936759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 136
Target Start/End: Complemental strand, 15938685 - 15938601
Alignment:
Q  52 acaacatcagttaatagcaataaccttaatggaacatgaatcacatctcatttcaacaacaacatatcaaaattcactaattgag 136  Q
    ||||||||| |||| | | ||||| | ||| ||||| |||||| ||||||  | ||||||||| ||||||||||||| |||||||    
T  15938685 acaacatcaattaacatccataacatcaattgaacaagaatcaaatctcaaattaacaacaacttatcaaaattcaccaattgag 15938601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 126; Significance: 4e-65; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 5 - 142
Target Start/End: Original strand, 21141895 - 21142032
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacatcagttaatagcaataaccttaatggaacatgaatcacatctcattt 104  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21141895 catcatcaatccataattatgtatacccaagtcgtaattcacccacaacaacatcagttaatagcaataaccttaatggaacatgaatcacatctcattt 21141994  T
Q  105 caacaacaacatatcaaaattcactaattgagtataat 142  Q
     |||||||||||||||| ||||||||||||||||||||    
T  21141995 taacaacaacatatcaagattcactaattgagtataat 21142032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 5 - 127
Target Start/End: Original strand, 12728392 - 12728514
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacatcagttaatagcaataaccttaatggaacatgaatcacatctcattt 104  Q
    ||||||||||||| ||||| |||||||||| |||| |||||| ||||| | |||||||||| |  ||  || | ||||||| ||||||||||||||||||    
T  12728392 catcatcaatccacaattaagtatacccaaatcatgattcactcacaatagcatcagttaacaataaccacatcaatggaatatgaatcacatctcattt 12728491  T
Q  105 caacaacaacatatcaaaattca 127  Q
    ||| || ||||||||||| ||||    
T  12728492 caataaaaacatatcaaatttca 12728514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 5 - 127
Target Start/End: Original strand, 34824475 - 34824597
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacatcagttaatagcaataaccttaatggaacatgaatcacatctcattt 104  Q
    ||||||||||||| ||||| |||||||||| |||| |||||| ||||| | |||||||||| |  ||  || | ||||||| ||||||||||||||||||    
T  34824475 catcatcaatccacaattaagtatacccaaatcatgattcactcacaatagcatcagttaacaataaccacatcaatggaatatgaatcacatctcattt 34824574  T
Q  105 caacaacaacatatcaaaattca 127  Q
    ||| || ||||||||||| ||||    
T  34824575 caataaaaacatatcaaatttca 34824597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 5 - 58
Target Start/End: Complemental strand, 5888885 - 5888832
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacat 58  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  5888885 catcatcaatccataattatgtatacccaagtcataattcactcacaacaacat 5888832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 5 - 136
Target Start/End: Complemental strand, 24341652 - 24341521
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacatcagttaatagcaataaccttaatggaacatgaatcacatctcattt 104  Q
    |||||||||| ||| | ||||||||||||||  || ||||| | |||  ||||||| |||| | ||||||| | ||| |||||||||||| |||||| ||    
T  24341652 catcatcaattcatgaatatgtatacccaagcaatgattcatcaacaggaacatcaattaacaacaataacatcaattgaacatgaatcatatctcaatt 24341553  T
Q  105 caacaacaacatatcaaaattcactaattgag 136  Q
    |||||||||| || |||||||||| |||||||    
T  24341552 caacaacaacttagcaaaattcaccaattgag 24341521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 5 - 127
Target Start/End: Complemental strand, 11231594 - 11231472
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacatcagttaatagcaataaccttaatggaacatgaatcacatctcattt 104  Q
    ||||||||||||| ||||| |||||||||| |||||||||||  |||| | |||||||||| |  ||  || ||||||||| |||||||||||||| |||    
T  11231594 catcatcaatccacaattaagtatacccaaatcataattcacttacaatagcatcagttaacaataaccacattaatggaatatgaatcacatctctttt 11231495  T
Q  105 caacaacaacatatcaaaattca 127  Q
    |||  | ||||||||||| ||||    
T  11231494 caatcaaaacatatcaaatttca 11231472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 5 - 142
Target Start/End: Complemental strand, 23778301 - 23778164
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacatcagttaatagcaataaccttaatggaacatgaatcacatctcattt 104  Q
    ||||||||||||| ||||| |||||||||| |||| |||||| ||||| | |||||||||| |  || ||| | ||||||| |||||| |||||||||||    
T  23778301 catcatcaatccacaattaagtatacccaaatcatgattcactcacaatagcatcagttaacaataacaacatcaatggaatatgaattacatctcattt 23778202  T
Q  105 caacaacaacatatcaaaattcactaattgagtataat 142  Q
    |||  | | ||||||||| ||||  |||| ||||||||    
T  23778201 caatcaaatcatatcaaatttcatcaattaagtataat 23778164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 127
Target Start/End: Original strand, 16935593 - 16935715
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacatcagttaatagcaataaccttaatggaacatgaatcacatctcattt 104  Q
    ||||||||||||| ||||| |||||||||| |||| |||||| ||||| | ||||| |||| |  ||  || | ||||||| ||||||||||||||||||    
T  16935593 catcatcaatccacaattaagtatacccaaatcatgattcactcacaatagcatcatttaacaataaccacatcaatggaatatgaatcacatctcattt 16935692  T
Q  105 caacaacaacatatcaaaattca 127  Q
    |||  | ||||||||||| ||||    
T  16935693 caatcaaaacatatcaaatttca 16935715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 127
Target Start/End: Original strand, 17006253 - 17006375
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacatcagttaatagcaataaccttaatggaacatgaatcacatctcattt 104  Q
    ||||||||||||| ||||| |||||||||| |||| |||||| ||||| | ||||| |||| |  ||  || | ||||||| ||||||||||||||||||    
T  17006253 catcatcaatccacaattaagtatacccaaatcatgattcactcacaatagcatcatttaacaataaccacatcaatggaatatgaatcacatctcattt 17006352  T
Q  105 caacaacaacatatcaaaattca 127  Q
    |||  | ||||||||||| ||||    
T  17006353 caatcaaaacatatcaaatttca 17006375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 107
Target Start/End: Complemental strand, 22513441 - 22513339
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacatcagttaatagcaataaccttaatggaacatgaatcacatctcattt 104  Q
    ||||||||||||| ||||| |||||||||| |||||||||||  |||| | |||||||||| |  ||  || ||||||||| |||||||||||||| |||    
T  22513441 catcatcaatccacaattaagtatacccaaatcataattcacttacaatagcatcagttaacaataaccacattaatggaatatgaatcacatctctttt 22513342  T
Q  105 caa 107  Q
    |||    
T  22513341 caa 22513339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 107
Target Start/End: Complemental strand, 28776063 - 28775961
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacatcagttaatagcaataaccttaatggaacatgaatcacatctcattt 104  Q
    ||||||||||||| ||||| |||||||||| |||||||||||  |||| | |||||||||| |  ||  || ||||||||| |||||||||||||| |||    
T  28776063 catcatcaatccacaattaagtatacccaaatcataattcacttacaatagcatcagttaacaataaccacattaatggaatatgaatcacatctctttt 28775964  T
Q  105 caa 107  Q
    |||    
T  28775963 caa 28775961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 5 - 58
Target Start/End: Original strand, 23774137 - 23774190
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacat 58  Q
    ||||||||||||||||||| |||||||||||| ||||||||| |||||||||||    
T  23774137 catcatcaatccataattaagtatacccaagttataattcactcacaacaacat 23774190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 5 - 107
Target Start/End: Complemental strand, 24686037 - 24685935
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacatcagttaatagcaataaccttaatggaacatgaatcacatctcattt 104  Q
    ||||||||||||| ||||| ||||||| || |||||||||||  |||| | |||||||||| |  ||  || ||||||||| |||||||||||||| |||    
T  24686037 catcatcaatccacaattaagtatacctaaatcataattcacttacaatagcatcagttaacaataaccacattaatggaatatgaatcacatctctttt 24685938  T
Q  105 caa 107  Q
    |||    
T  24685937 caa 24685935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 136
Target Start/End: Complemental strand, 19794967 - 19794836
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacatcagttaatagcaataaccttaatggaacatgaatcacatctcattt 104  Q
    |||||||||||||| | |||| |||||||||  || ||||| | || | ||||||| ||||  | |||||| | ||| ||||| |||||| | |||| ||    
T  19794967 catcatcaatccatgaatatgcatacccaagcaatgattcatcaactataacatcaattaacggaaataacatcaattgaacaagaatcataactcaatt 19794868  T
Q  105 caacaacaacatatcaaaattcactaattgag 136  Q
    |||||||||| || |||||||||| |||||||    
T  19794867 caacaacaacttagcaaaattcaccaattgag 19794836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 136
Target Start/End: Complemental strand, 25265653 - 25265522
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacatcagttaatagcaataaccttaatggaacatgaatcacatctcattt 104  Q
    |||||||||| ||| | |||| ||||||||| ||| |||||   |||||||||||| |||| | ||| ||| | ||| |||||||  || ||||  | ||    
T  25265653 catcatcaattcatgaatatgcatacccaagccatgattcataaacaacaacatcaattaacaacaacaacatcaattgaacatggttctcatcataatt 25265554  T
Q  105 caacaacaacatatcaaaattcactaattgag 136  Q
    ||||||||||||| |||||||||| |||||||    
T  25265553 caacaacaacatagcaaaattcaccaattgag 25265522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 136
Target Start/End: Complemental strand, 36982704 - 36982573
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacatcagttaatagcaataaccttaatggaacatgaatcacatctcattt 104  Q
    |||||||||| ||| | |||| ||||||||   || ||||| | |||||||||||| |||| | ||||||| | ||| ||||| |||||| | |||| ||    
T  36982704 catcatcaattcatgaatatgcatacccaaacaatgattcatcaacaacaacatcaattaacaacaataacatcaattgaacaggaatcataactcaatt 36982605  T
Q  105 caacaacaacatatcaaaattcactaattgag 136  Q
    |||||||||| |  |||||||||| |||||||    
T  36982604 caacaacaacttggcaaaattcaccaattgag 36982573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 60
Target Start/End: Original strand, 22138158 - 22138214
Alignment:
Q  5 catcatcaatccat-aattatgtatacccaagtcataattcacccacaacaacatca 60  Q
    |||||||||| ||| ||||||| ||||||||||||||| ||||| ||||||| ||||    
T  22138158 catcatcaattcatgaattatgaatacccaagtcataaatcaccaacaacaatatca 22138214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0191 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: scaffold0191
Description:

Target: scaffold0191; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 5 - 142
Target Start/End: Complemental strand, 7712 - 7575
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacatcagttaatagcaataaccttaatggaacatgaatcacatctcattt 104  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  7712 catcatcaatccataattatgtatacccaagtcataattcactcacaacaacatcagttaataacaataaccttaatggaacatgaatcacatctcattt 7613  T
Q  105 caacaacaacatatcaaaattcactaattgagtataat 142  Q
     |||||||||||||||| ||||||||||||||||||||    
T  7612 taacaacaacatatcaagattcactaattgagtataat 7575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 122; Significance: 1e-62; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 5 - 142
Target Start/End: Complemental strand, 17145913 - 17145776
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacatcagttaatagcaataaccttaatggaacatgaatcacatctcattt 104  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||    
T  17145913 catcatcaatccgtaattatgtatacccaagtcataattcacccacaacaacatcagttaatagcaacaacatcaatggaacatgaatcacatctcattt 17145814  T
Q  105 caacaacaacatatcaaaattcactaattgagtataat 142  Q
    ||||||||||||||||||||||||||||||||||||||    
T  17145813 caacaacaacatatcaaaattcactaattgagtataat 17145776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 5 - 142
Target Start/End: Original strand, 8374508 - 8374645
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacatcagttaatagcaataaccttaatggaacatgaatcacatctcattt 104  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||    
T  8374508 catcatcaatcgataattatgtatacccaagccataattcacccacaacaacatcagttaatagcaacaacatcaatggaacatgaatcacatctcattt 8374607  T
Q  105 caacaacaacatatcaaaattcactaattgagtataat 142  Q
    |||||||||||||| |||||||||||||||||||||||    
T  8374608 caacaacaacatattaaaattcactaattgagtataat 8374645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 5 - 142
Target Start/End: Original strand, 18248218 - 18248355
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacatcagttaatagcaataaccttaatggaacatgaatcacatctcattt 104  Q
    ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||    
T  18248218 catcatcaatcgataattatgtataccaaagtcataattcacccacaacaacatcagttaatagcaacaacatcaatggaacatgaatcacatctcattt 18248317  T
Q  105 caacaacaacatatcaaaattcactaattgagtataat 142  Q
    |||||||||||||| |||||||||||||||||||||||    
T  18248318 caacaacaacatattaaaattcactaattgagtataat 18248355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 5 - 142
Target Start/End: Complemental strand, 15287501 - 15287364
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacatcagttaatagcaataaccttaatggaacatgaatcacatctcattt 104  Q
    ||||||||||||||||||| ||||||||||||||| |||||| ||||||| |||||||||| |  || ||| | ||||||| |||||| |||||||||||    
T  15287501 catcatcaatccataattaagtatacccaagtcatgattcactcacaacagcatcagttaacaataacaacatcaatggaatatgaattacatctcattt 15287402  T
Q  105 caacaacaacatatcaaaattcactaattgagtataat 142  Q
    |||  | ||||||||||| ||||  ||| |||||||||    
T  15287401 caatcaaaacatatcaaatttcatcaatggagtataat 15287364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 5 - 142
Target Start/End: Complemental strand, 15294610 - 15294473
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacatcagttaatagcaataaccttaatggaacatgaatcacatctcattt 104  Q
    ||||||||||||||||||| ||||||||||||||| |||||| ||||||| |||||||||| |  || ||| | ||||||| |||||| |||||||||||    
T  15294610 catcatcaatccataattaagtatacccaagtcatgattcactcacaacagcatcagttaacaataacaacatcaatggaatatgaattacatctcattt 15294511  T
Q  105 caacaacaacatatcaaaattcactaattgagtataat 142  Q
    |||  | ||||||||||| ||||  ||| |||||||||    
T  15294510 caatcaaaacatatcaaatttcatcaatggagtataat 15294473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 5 - 136
Target Start/End: Complemental strand, 15675352 - 15675221
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacatcagttaatagcaataaccttaatggaacatgaatcacatctcattt 104  Q
    |||||||||| ||| | ||||||||||||||  || ||||| | |||||||||||| |||| | ||||||| | ||| |||||||||||| |||||| ||    
T  15675352 catcatcaattcatgaatatgtatacccaagcaatgattcatcaacaacaacatcaattaacaacaataacatcaattgaacatgaatcatatctcaatt 15675253  T
Q  105 caacaacaacatatcaaaattcactaattgag 136  Q
    |||||||||| || |||||||||| |||||||    
T  15675252 caacaacaacttagcaaaattcaccaattgag 15675221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 5 - 142
Target Start/End: Original strand, 31115629 - 31115766
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacatcagttaatagcaataaccttaatggaacatgaatcacatctcattt 104  Q
    |||||||||| ||| | ||||||||||||||  || ||||| | |||||||||||| |||| | ||||||| | ||| |||||||||||| |||||| ||    
T  31115629 catcatcaattcatgaatatgtatacccaagcaatgattcatcaacaacaacatcaattaacaacaataacatcaattgaacatgaatcatatctcaatt 31115728  T
Q  105 caacaacaacatatcaaaattcactaattgagtataat 142  Q
    |||||||||| ||  ||||||||| ||||||| |||||    
T  31115729 caacaacaacttaggaaaattcaccaattgagcataat 31115766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 127
Target Start/End: Original strand, 19020486 - 19020608
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacatcagttaatagcaataaccttaatggaacatgaatcacatctcattt 104  Q
    ||||||||||||| ||||| |||||| ||| |||| |||||| ||||| | |||||||||| |  || ||| | ||||||| |||||| |||||||||||    
T  19020486 catcatcaatccacaattaagtatactcaaatcatgattcactcacaatagcatcagttaacaataacaacatcaatggaatatgaattacatctcattt 19020585  T
Q  105 caacaacaacatatcaaaattca 127  Q
    |||  | ||||||||||| ||||    
T  19020586 caatcaaaacatatcaaatttca 19020608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 5 - 58
Target Start/End: Complemental strand, 22352302 - 22352249
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacat 58  Q
    ||||||||||||||||||| |||||||||||| ||||||||| |||||||||||    
T  22352302 catcatcaatccataattaagtatacccaagttataattcactcacaacaacat 22352249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 58
Target Start/End: Original strand, 22738269 - 22738322
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacat 58  Q
    |||||| |||||| ||||| |||||||||||||||||||||||| |||||||||    
T  22738269 catcattaatccacaattaagtatacccaagtcataattcaccctcaacaacat 22738322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 58
Target Start/End: Original strand, 26339020 - 26339073
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacat 58  Q
    |||||| |||||||||||| |||||||||||| ||||||||| |||||||||||    
T  26339020 catcattaatccataattaagtatacccaagttataattcactcacaacaacat 26339073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 136
Target Start/End: Complemental strand, 10104435 - 10104382
Alignment:
Q  83 gaacatgaatcacatctcatttcaacaacaacatatcaaaattcactaattgag 136  Q
    |||||||||||| |||||| |||||||||||| || |||||||||| |||||||    
T  10104435 gaacatgaatcatatctcaattcaacaacaacttagcaaaattcaccaattgag 10104382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 127
Target Start/End: Original strand, 18168970 - 18169092
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacatcagttaatagcaataaccttaatggaacatgaatcacatctcattt 104  Q
    |||||||||| || ||||| ||||| |||| |||| |||||| ||||| | ||| | |||| |  ||  || | ||||||| ||||||||||||||||||    
T  18168970 catcatcaattcacaattaagtatatccaaatcatgattcactcacaatagcattatttaacaataaccacatcaatggaatatgaatcacatctcattt 18169069  T
Q  105 caacaacaacatatcaaaattca 127  Q
    |||  | ||||||||||| ||||    
T  18169070 caatcaaaacatatcaaatttca 18169092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 114; Significance: 6e-58; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 5 - 142
Target Start/End: Complemental strand, 11212321 - 11212184
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacatcagttaatagcaataaccttaatggaacatgaatcacatctcattt 104  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||    
T  11212321 catcatcaatccataattatgtatacccaagtcataatccacccacaacaacatcagttaatagcaacaacatcaatggaacatgaatcacatctcattt 11212222  T
Q  105 caacaacaacatatcaaaattcactaattgagtataat 142  Q
    |||||||||||||| ||||||||||| |||||||||||    
T  11212221 caacaacaacatattaaaattcactacttgagtataat 11212184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 5 - 125
Target Start/End: Complemental strand, 35791355 - 35791235
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacatcagttaatagcaataaccttaatggaacatgaatcacatctcattt 104  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| | ||||||||||||||||||||||||||    
T  35791355 catcatcaatccataattatgtatacccaagtcataattcaccctcaacaacatcagttaatagcaacaacatcaatggaacatgaatcacatctcattt 35791256  T
Q  105 caacaacaacatatcaaaatt 125  Q
    |||||||||||||||||||||    
T  35791255 caacaacaacatatcaaaatt 35791235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 5 - 128
Target Start/End: Original strand, 32950693 - 32950816
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacatcagttaatagcaataaccttaatggaacatgaatcacatctcattt 104  Q
    |||| ||||||||| | |||| | ||||||||||| ||||||||||||||||||||||||||||||  ||| | |||||||||||||||||||||| |||    
T  32950693 catcttcaatccatgaatatgcagacccaagtcatgattcacccacaacaacatcagttaatagcatcaacatcaatggaacatgaatcacatctctttt 32950792  T
Q  105 caacaacaacatatcaaaattcac 128  Q
    |||||||||||||  |||||||||    
T  32950793 caacaacaacatagtaaaattcac 32950816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 5 - 136
Target Start/End: Complemental strand, 22054096 - 22053965
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacatcagttaatagcaataaccttaatggaacatgaatcacatctcattt 104  Q
    |||||||||| ||| | |||||| |||||||  || ||||| | |||||||||||| |||| ||||||||| | ||| |||||||||||| |||||| ||    
T  22054096 catcatcaattcatgaatatgtagacccaagcaatgattcatcaacaacaacatcaattaacagcaataacatcaattgaacatgaatcatatctcaatt 22053997  T
Q  105 caacaacaacatatcaaaattcactaattgag 136  Q
    |||||||||| || |||||||||| |||||||    
T  22053996 caacaacaacttagcaaaattcaccaattgag 22053965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 5 - 127
Target Start/End: Original strand, 7425324 - 7425446
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacatcagttaatagcaataaccttaatggaacatgaatcacatctcattt 104  Q
    ||||||||||||||||||| ||||| ||||||||| |||||| ||||||| |||||||||| |  || ||| | ||||||| |||||| |||||||||||    
T  7425324 catcatcaatccataattaagtatatccaagtcatgattcactcacaacagcatcagttaacaataacaacatcaatggaatatgaattacatctcattt 7425423  T
Q  105 caacaacaacatatcaaaattca 127  Q
    |||  | ||||||||||| ||||    
T  7425424 caatcaaaacatatcaaatttca 7425446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 5 - 135
Target Start/End: Complemental strand, 18531330 - 18531200
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacatcagttaatagcaataaccttaatggaacatgaatcacatctcattt 104  Q
    |||||||||| ||| | ||||||||||| ||  || ||||| | |||||||||||| |||| ||||||||| | ||| |||||||||||| |||||| ||    
T  18531330 catcatcaattcatgaatatgtatacccgagcaatgattcatcaacaacaacatcaattaacagcaataacatcaattgaacatgaatcatatctcaatt 18531231  T
Q  105 caacaacaacatatcaaaattcactaattga 135  Q
    |||||||||| || |||||||||| ||||||    
T  18531230 caacaacaacttagcaaaattcaccaattga 18531200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 5 - 127
Target Start/End: Complemental strand, 22883340 - 22883218
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacatcagttaatagcaataaccttaatggaacatgaatcacatctcattt 104  Q
    ||||||||||||| ||||| |||||||||| |||||||||||  |||| | |||||||||| |  ||  || ||||||||| |||||||||||||| |||    
T  22883340 catcatcaatccacaattaagtatacccaaatcataattcacttacaatagcatcagttaacaataaccacattaatggaatatgaatcacatctctttt 22883241  T
Q  105 caacaacaacatatcaaaattca 127  Q
    |||  | ||||||||||| ||||    
T  22883240 caatcaaaacatatcaaatttca 22883218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 127
Target Start/End: Complemental strand, 1219776 - 1219654
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacatcagttaatagcaataaccttaatggaacatgaatcacatctcattt 104  Q
    ||||||||||||| ||||| |||||||||| |||| |||||| ||||| | |||||||||| |  ||  || | |||| || ||||||||||||||||||    
T  1219776 catcatcaatccacaattaagtatacccaaatcatgattcactcacaatagcatcagttaacaataaccacatcaatgaaatatgaatcacatctcattt 1219677  T
Q  105 caacaacaacatatcaaaattca 127  Q
    |||  | ||||||||||| ||||    
T  1219676 caatcaaaacatatcaaatttca 1219654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 107
Target Start/End: Original strand, 35582036 - 35582138
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacatcagttaatagcaataaccttaatggaacatgaatcacatctcattt 104  Q
    ||||||||||||| ||||| |||||||||| |||||||||||  |||| | |||||||||| |  ||  || ||||||||| |||||||||||||| |||    
T  35582036 catcatcaatccacaattaagtatacccaaatcataattcacttacaatagcatcagttaacaataaccacattaatggaatatgaatcacatctctttt 35582135  T
Q  105 caa 107  Q
    |||    
T  35582136 caa 35582138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 107
Target Start/End: Complemental strand, 36990026 - 36989924
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacatcagttaatagcaataaccttaatggaacatgaatcacatctcattt 104  Q
    ||||||||||||| ||||| |||||||||| |||||||||||  |||| | |||||||||| |  ||  || ||||||||| |||||||||||||| |||    
T  36990026 catcatcaatccacaattaagtatacccaaatcataattcacttacaatagcatcagttaacaataaccacattaatggaatatgaatcacatctctttt 36989927  T
Q  105 caa 107  Q
    |||    
T  36989926 caa 36989924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 5 - 107
Target Start/End: Complemental strand, 21932637 - 21932535
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacatcagttaatagcaataaccttaatggaacatgaatcacatctcattt 104  Q
    ||||||||||||| ||||| |||||||||| |||||||||||  ||||   |||||||||| |  ||  || ||||||||| |||||||||||||| |||    
T  21932637 catcatcaatccacaattaagtatacccaaatcataattcacttacaatggcatcagttaacaataaccacattaatggaatatgaatcacatctctttt 21932538  T
Q  105 caa 107  Q
    |||    
T  21932537 caa 21932535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 5 - 107
Target Start/End: Complemental strand, 21938807 - 21938705
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacatcagttaatagcaataaccttaatggaacatgaatcacatctcattt 104  Q
    ||||||||||||| ||||| |||||||||| |||||||||||  ||||   |||||||||| |  ||  || ||||||||| |||||||||||||| |||    
T  21938807 catcatcaatccacaattaagtatacccaaatcataattcacttacaatggcatcagttaacaataaccacattaatggaatatgaatcacatctctttt 21938708  T
Q  105 caa 107  Q
    |||    
T  21938707 caa 21938705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 58
Target Start/End: Original strand, 23328558 - 23328611
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacat 58  Q
    ||||||||||||| ||||| |||||||||||| ||||||||| |||||||||||    
T  23328558 catcatcaatccacaattaagtatacccaagttataattcactcacaacaacat 23328611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 58
Target Start/End: Original strand, 24616165 - 24616216
Alignment:
Q  7 tcatcaatccataattatgtatacccaagtcataattcacccacaacaacat 58  Q
    ||||||||||| ||||| |||||||||||| ||||||||| |||||||||||    
T  24616165 tcatcaatccacaattaagtatacccaagttataattcactcacaacaacat 24616216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 58
Target Start/End: Original strand, 24712541 - 24712592
Alignment:
Q  7 tcatcaatccataattatgtatacccaagtcataattcacccacaacaacat 58  Q
    ||||||||||| ||||| |||||||||||| ||||||||| |||||||||||    
T  24712541 tcatcaatccacaattaagtatacccaagttataattcactcacaacaacat 24712592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 58
Target Start/End: Original strand, 24745559 - 24745610
Alignment:
Q  7 tcatcaatccataattatgtatacccaagtcataattcacccacaacaacat 58  Q
    ||||||||||| ||||| |||||||||||| ||||||||| |||||||||||    
T  24745559 tcatcaatccacaattaagtatacccaagttataattcactcacaacaacat 24745610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 142
Target Start/End: Complemental strand, 17471844 - 17471707
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacatcagttaatagcaataaccttaatggaacatgaatcacatctcattt 104  Q
    |||||||||| ||| | ||||  ||||||||  || |||||  ||||| |||||||||||| |  || ||| | ||||||| |||||| |||||| ||||    
T  17471844 catcatcaattcatgaatatgcgtacccaagcaatgattcattcacaataacatcagttaacaataacaacatcaatggaatatgaattacatcttattt 17471745  T
Q  105 caacaacaacatatcaaaattcactaattgagtataat 142  Q
    |||  | ||||||||||| ||||  |||| ||||||||    
T  17471744 caatcaaaacatatcaaatttcatcaattaagtataat 17471707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 106; Significance: 3e-53; HSPs: 3)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 5 - 138
Target Start/End: Original strand, 54416 - 54549
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacatcagttaatagcaataaccttaatggaacatgaatcacatctcattt 104  Q
    |||||||||||||||| ||||||||||||| |||| ||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||    
T  54416 catcatcaatccataaatatgtatacccaactcatgattcacccacaacaacatcagttaatagcaacaacatcaatggaacatgaatcacatctcattt 54515  T
Q  105 caacaacaacatatcaaaattcactaattgagta 138  Q
    |||||||||||||||||||||||| |||||||||    
T  54516 caacaacaacatatcaaaattcaccaattgagta 54549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 50 - 138
Target Start/End: Original strand, 45075 - 45163
Alignment:
Q  50 caacaacatcagttaatagcaataaccttaatggaacatgaatcacatctcatttcaacaacaacatatcaaaattcactaattgagta 138  Q
    |||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  45075 caacaacatcagttaatagcaacaacatcaatggaacatgaatcacatctcatttcaacaacaacatatcaaaattcaccaattgagta 45163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 5 - 71
Target Start/End: Original strand, 45011 - 45077
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacatcagttaatagcaa 71  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||    
T  45011 catcatcaatccataaatatgtatacccaagtcatgattcacccacaacaacatcagttaatagcaa 45077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 97; Significance: 8e-48; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 5 - 125
Target Start/End: Original strand, 16195230 - 16195350
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacatcagttaatagcaataaccttaatggaacatgaatcacatctcattt 104  Q
    |||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||||||||| ||| | ||||||||||||||||||||||||||    
T  16195230 catcatcaatccataattatatatacctaagtcataattcaccctcaacaacatcagttaatagcaacaacatcaatggaacatgaatcacatctcattt 16195329  T
Q  105 caacaacaacatatcaaaatt 125  Q
    |||||||||||||||||||||    
T  16195330 caacaacaacatatcaaaatt 16195350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 5 - 127
Target Start/End: Complemental strand, 13662521 - 13662399
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacatcagttaatagcaataaccttaatggaacatgaatcacatctcattt 104  Q
    |||||||||||||||||||||||||||||| |||| |||||| ||||| | |||||||||| |  ||  || | ||||||| ||||||||||||||||||    
T  13662521 catcatcaatccataattatgtatacccaaatcatgattcactcacaatagcatcagttaacaataaccacatcaatggaatatgaatcacatctcattt 13662422  T
Q  105 caacaacaacatatcaaaattca 127  Q
    |||  | ||||||||||| ||||    
T  13662421 caatcaaaacatatcaaatttca 13662399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 5 - 127
Target Start/End: Complemental strand, 15319415 - 15319293
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacatcagttaatagcaataaccttaatggaacatgaatcacatctcattt 104  Q
    ||||||||||||| ||||| |||||||||| |||||||||||  |||| | |||||||||| |  ||  || |||||||||||||||||||||||| |||    
T  15319415 catcatcaatccacaattaagtatacccaaatcataattcacttacaatagcatcagttaacaataaccacattaatggaacatgaatcacatctctttt 15319316  T
Q  105 caacaacaacatatcaaaattca 127  Q
    |||  | ||||||||||| ||||    
T  15319315 caatcaaaacatatcaaatttca 15319293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 5 - 127
Target Start/End: Complemental strand, 15499784 - 15499662
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacatcagttaatagcaataaccttaatggaacatgaatcacatctcattt 104  Q
    ||||||||||||| ||||| |||||||||| |||||||||||  |||| | |||||||||| |  ||  || |||||||||||||||||||||||| |||    
T  15499784 catcatcaatccacaattaagtatacccaaatcataattcacttacaatagcatcagttaacaataaccacattaatggaacatgaatcacatctctttt 15499685  T
Q  105 caacaacaacatatcaaaattca 127  Q
    |||  | ||||||||||| ||||    
T  15499684 caatcaaaacatatcaaatttca 15499662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 5 - 127
Target Start/End: Complemental strand, 22006514 - 22006392
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacatcagttaatagcaataaccttaatggaacatgaatcacatctcattt 104  Q
    |||||||| |||| ||||| |||||||||| |||| |||||| ||||| |||||||||||| |  ||  || | ||||||| ||||||||||||||||||    
T  22006514 catcatcagtccacaattaagtatacccaaatcatgattcactcacaataacatcagttaacaataaccacatcaatggaatatgaatcacatctcattt 22006415  T
Q  105 caacaacaacatatcaaaattca 127  Q
    |||  | ||||||||||| ||||    
T  22006414 caatcaaaacatatcaaatttca 22006392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 5 - 127
Target Start/End: Complemental strand, 22089050 - 22088928
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacatcagttaatagcaataaccttaatggaacatgaatcacatctcattt 104  Q
    ||||||||||||| ||||| |||||||||| |||||||||||  |||| | |||||||||| |  ||  || ||||||||| |||||||||||||| |||    
T  22089050 catcatcaatccacaattaagtatacccaaatcataattcacttacaatagcatcagttaacaataaccacattaatggaatatgaatcacatctctttt 22088951  T
Q  105 caacaacaacatatcaaaattca 127  Q
    |||  | ||||||||||| ||||    
T  22088950 caatcaaaacatatcaaatttca 22088928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 107
Target Start/End: Complemental strand, 271616 - 271514
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacatcagttaatagcaataaccttaatggaacatgaatcacatctcattt 104  Q
    ||||||||||||| ||||| |||||||||| |||||||||||  |||| | |||||||||| |  ||  || ||||||||| |||||||||||||| |||    
T  271616 catcatcaatccacaattaagtatacccaaatcataattcacttacaatagcatcagttaacaataaccacattaatggaatatgaatcacatctctttt 271517  T
Q  105 caa 107  Q
    |||    
T  271516 caa 271514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 107
Target Start/End: Original strand, 644304 - 644406
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacatcagttaatagcaataaccttaatggaacatgaatcacatctcattt 104  Q
    ||||||||||||| ||||| |||||||||| |||||||||||  |||| | |||||||||| |  ||  || ||||||||| |||||||||||||| |||    
T  644304 catcatcaatccacaattaagtatacccaaatcataattcacttacaatagcatcagttaacaataaccacattaatggaatatgaatcacatctctttt 644403  T
Q  105 caa 107  Q
    |||    
T  644404 caa 644406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 107
Target Start/End: Original strand, 830039 - 830141
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacatcagttaatagcaataaccttaatggaacatgaatcacatctcattt 104  Q
    ||||||||||||| ||||| |||||||||| |||||||||||  |||| | |||||||||| |  ||  || ||||||||| |||||||||||||| |||    
T  830039 catcatcaatccacaattaagtatacccaaatcataattcacttacaatagcatcagttaacaataaccacattaatggaatatgaatcacatctctttt 830138  T
Q  105 caa 107  Q
    |||    
T  830139 caa 830141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 5 - 141
Target Start/End: Complemental strand, 34414 - 34278
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacatcagttaatagcaataaccttaatggaacatgaatcacatctcattt 104  Q
    ||||||||||||||||||  ||||||||||||||| |||||| ||||| | |||||||||||||||| ||| |||||||||||||||||| |||||||||    
T  34414 catcatcaatccataatttagtatacccaagtcatgattcactcacaatagcatcagttaatagcaacaacattaatggaacatgaatcatatctcattt 34315  T
Q  105 caacaacaacatatcaaaattcactaattgagtataa 141  Q
    ||||||||||||||| |||||||  |||| |||||||    
T  34314 caacaacaacatatccaaattcatcaattaagtataa 34278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 22 - 128
Target Start/End: Complemental strand, 56346 - 56240
Alignment:
Q  22 tatgtatacccaagtcataattcacccacaacaacatcagttaatagcaataaccttaatggaacatgaatcacatctcatttcaacaacaacatatcaa 121  Q
    |||| ||||||||||||| |||||||||||||||||||| |||||||||  ||| | ||||||||||||||||||| || ||||||||||||| || |||    
T  56346 tatgcatacccaagtcatgattcacccacaacaacatcaattaatagcatcaacatcaatggaacatgaatcacatatcttttcaacaacaacttagcaa 56247  T
Q  122 aattcac 128  Q
    |||||||    
T  56246 aattcac 56240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 5 - 136
Target Start/End: Original strand, 8849 - 8980
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacatcagttaatagcaataaccttaatggaacatgaatcacatctcattt 104  Q
    |||||||||| ||| | ||||||||||||||  || ||||| | |||||||||||| |||||||||||||| | ||| |||||| ||||| |||||| ||    
T  8849 catcatcaattcatgaatatgtatacccaagcaatgattcatcaacaacaacatcaattaatagcaataacatcaattgaacattaatcatatctcaatt 8948  T
Q  105 caacaacaacatatcaaaattcactaattgag 136  Q
    |||||||||| || |||||||||| |||||||    
T  8949 caacaacaacttagcaaaattcaccaattgag 8980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 5 - 142
Target Start/End: Original strand, 1556005 - 1556142
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacatcagttaatagcaataaccttaatggaacatgaatcacatctcattt 104  Q
    ||||||||||||| ||||| |||||||||| ||||||||||| ||||| |||||||||||| |  || ||| | ||||||| |||||| |||||||||||    
T  1556005 catcatcaatccacaattaagtatacccaattcataattcactcacaataacatcagttaacaataacaacatcaatggaatatgaattacatctcattt 1556104  T
Q  105 caacaacaacatatcaaaattcactaattgagtataat 142  Q
    |||  | ||||||||||| ||||  |||| ||||||||    
T  1556105 caattaaaacatatcaaatttcatcaattaagtataat 1556142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 5 - 127
Target Start/End: Original strand, 19610018 - 19610140
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacatcagttaatagcaataaccttaatggaacatgaatcacatctcattt 104  Q
    ||||||||||||||||||| ||||||||||||||| |||||| ||||||| |||||||||| |  || ||| | ||||||| |||||  |||||||||||    
T  19610018 catcatcaatccataattaagtatacccaagtcatgattcactcacaacagcatcagttaacaataacaacatcaatggaatatgaactacatctcattt 19610117  T
Q  105 caacaacaacatatcaaaattca 127  Q
    |||  | ||||||||||| ||||    
T  19610118 caatcaaaacatatcaaatttca 19610140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 5 - 136
Target Start/End: Original strand, 27740838 - 27740969
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacatcagttaatagcaataaccttaatggaacatgaatcacatctcattt 104  Q
    |||||||||| ||| | |||| ||||||||  ||| ||||| ||||||||||||||| |||||||||  || | ||| |||||||||||| |||||| ||    
T  27740838 catcatcaattcatgaatatgcatacccaaaccatgattcatccacaacaacatcagataatagcaaccacatcaattgaacatgaatcatatctcaatt 27740937  T
Q  105 caacaacaacatatcaaaattcactaattgag 136  Q
    ||||||| || || |||||||||| |||||||    
T  27740938 caacaacgacttagcaaaattcaccaattgag 27740969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 5 - 127
Target Start/End: Complemental strand, 16376629 - 16376507
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacatcagttaatagcaataaccttaatggaacatgaatcacatctcattt 104  Q
    ||||||||||||| ||||| |||||||||| |||||||||||  |||| | |||||||||| |  ||  || ||||||||| |||||||||||||| |||    
T  16376629 catcatcaatccacaattaagtatacccaaatcataattcacttacaatagcatcagttaacaataaccacattaatggaatatgaatcacatctctttt 16376530  T
Q  105 caacaacaacatatcaaaattca 127  Q
    |||  | ||||||||||| ||||    
T  16376529 caatcaaaacatatcaaatttca 16376507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 5 - 127
Target Start/End: Complemental strand, 16383953 - 16383831
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacatcagttaatagcaataaccttaatggaacatgaatcacatctcattt 104  Q
    ||||||||||||| ||||| |||||||||| |||||||||||  |||| | |||||||||| |  ||  || ||||||||| |||||||||||||| |||    
T  16383953 catcatcaatccacaattaagtatacccaaatcataattcacttacaatagcatcagttaacaataaccacattaatggaatatgaatcacatctctttt 16383854  T
Q  105 caacaacaacatatcaaaattca 127  Q
    |||  | ||||||||||| ||||    
T  16383853 caatcaaaacatatcaaatttca 16383831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 5 - 127
Target Start/End: Complemental strand, 16556395 - 16556273
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacatcagttaatagcaataaccttaatggaacatgaatcacatctcattt 104  Q
    ||||||||||||| ||||| |||||||||| |||||||||||  |||| | |||||||||| |  ||  || ||||||||| |||||||||||||| |||    
T  16556395 catcatcaatccacaattaagtatacccaaatcataattcacttacaatagcatcagttaacaataaccacattaatggaatatgaatcacatctctttt 16556296  T
Q  105 caacaacaacatatcaaaattca 127  Q
    |||  | ||||||||||| ||||    
T  16556295 caatcaaaacatatcaaatttca 16556273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 5 - 127
Target Start/End: Complemental strand, 16632951 - 16632829
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacatcagttaatagcaataaccttaatggaacatgaatcacatctcattt 104  Q
    ||||||||||||| ||||| |||||||||| |||||||||||  |||| | |||||||||| |  ||  || ||||||||| |||||||||||||| |||    
T  16632951 catcatcaatccacaattaagtatacccaaatcataattcacttacaatagcatcagttaacaataaccacattaatggaatatgaatcacatctctttt 16632852  T
Q  105 caacaacaacatatcaaaattca 127  Q
    |||  | ||||||||||| ||||    
T  16632851 caatcaaaacatatcaaatttca 16632829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 5 - 107
Target Start/End: Complemental strand, 22225994 - 22225892
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacatcagttaatagcaataaccttaatggaacatgaatcacatctcattt 104  Q
    ||||||||||||| ||||| |||||||||| |||||||||||  |||| | |||||||||| |  ||  || ||||||||| ||||||||||||||||||    
T  22225994 catcatcaatccacaattaagtatacccaaatcataattcacttacaatagcatcagttaacaataaccacattaatggaatatgaatcacatctcattt 22225895  T
Q  105 caa 107  Q
    |||    
T  22225894 caa 22225892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 107
Target Start/End: Original strand, 10488699 - 10488801
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacatcagttaatagcaataaccttaatggaacatgaatcacatctcattt 104  Q
    ||||||||||||| ||||| |||||||||| |||||||||||  |||| | |||||||||| |  ||  || ||||||||| |||||||||||||| |||    
T  10488699 catcatcaatccacaattaagtatacccaaatcataattcacttacaatagcatcagttaacaataaccacattaatggaatatgaatcacatctctttt 10488798  T
Q  105 caa 107  Q
    |||    
T  10488799 caa 10488801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 83 - 138
Target Start/End: Original strand, 29665951 - 29666006
Alignment:
Q  83 gaacatgaatcacatctcatttcaacaacaacatatcaaaattcactaattgagta 138  Q
    |||||||||||| ||||||||||||||||||| || |||||||||| |||||||||    
T  29665951 gaacatgaatcatatctcatttcaacaacaacttagcaaaattcaccaattgagta 29666006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 60
Target Start/End: Original strand, 29665892 - 29665947
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacatca 60  Q
    ||||| |||||||| | |||| ||||||||||||| ||||||||||||||||||||    
T  29665892 catcaccaatccatgaatatgcatacccaagtcatgattcacccacaacaacatca 29665947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 136
Target Start/End: Complemental strand, 35009702 - 35009571
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacatcagttaatagcaataaccttaatggaacatgaatcacatctcattt 104  Q
    |||||||||| ||| | |||| |||||||||  || ||||| | |||||||||||| |||| | ||| ||| | ||| |||||||  || ||||  | ||    
T  35009702 catcatcaattcatgaatatgcatacccaagcaatgattcatcaacaacaacatcaattaacaacaacaacatcaattgaacatggttctcatcataatt 35009603  T
Q  105 caacaacaacatatcaaaattcactaattgag 136  Q
    ||||||||||||| |||||||||| |||||||    
T  35009602 caacaacaacatagcaaaattcaccaattgag 35009571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 58
Target Start/End: Complemental strand, 29870031 - 29869978
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacat 58  Q
    |||||||||||||| |||| ||| |||||||| ||||||||| |||||||||||    
T  29870031 catcatcaatccatcattaagtacacccaagttataattcactcacaacaacat 29869978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 136
Target Start/End: Original strand, 23153464 - 23153578
Alignment:
Q  22 tatgtatacccaagtcataattcacccacaacaacatcagttaatagcaataaccttaatggaacatgaatcacatctcatttcaacaacaacatatcaa 121  Q
    ||||||||||||||| || ||||| | || ||||||||| |||| ||| ||||  | ||| ||||| |||||| | |||| |  ||||||||| || |||    
T  23153464 tatgtatacccaagtaatgattcatcaaccacaacatcaattaacagccataatatcaattgaacaagaatcataactcaatctaacaacaacttagcaa 23153563  T
Q  122 aattcactaattgag 136  Q
    ||||||| |||||||    
T  23153564 aattcaccaattgag 23153578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 65
Target Start/End: Complemental strand, 33314474 - 33314414
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacatcagttaa 65  Q
    ||||||||||||| ||||| |||||||||| |||| ||||||  |||| | ||||||||||    
T  33314474 catcatcaatccacaattaagtatacccaaatcatgattcacttacaatagcatcagttaa 33314414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0467 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0467
Description:

Target: scaffold0467; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 5 - 142
Target Start/End: Complemental strand, 10595 - 10458
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacatcagttaatagcaataaccttaatggaacatgaatcacatctcattt 104  Q
    ||||||||||||| ||||| ||||||||||||||| |||| | ||||| | |||||||||| | ||| ||| | ||||||| |||||| |||||||||||    
T  10595 catcatcaatccacaattaagtatacccaagtcatgattccctcacaatagcatcagttaacaacaacaacatcaatggaatatgaattacatctcattt 10496  T
Q  105 caacaacaacatatcaaaattcactaattgagtataat 142  Q
    |||  | ||||||||||| ||||  |||| ||||||||    
T  10495 caatcaaaacatatcaaatttcatcaattaagtataat 10458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0383 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0383
Description:

Target: scaffold0383; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 5 - 142
Target Start/End: Original strand, 2392 - 2529
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacatcagttaatagcaataaccttaatggaacatgaatcacatctcattt 104  Q
    ||||||||||||| ||||| ||||||||||  ||| |||||| ||||| |||||||||||| |  || ||| | ||||||| |||||| |||||||||||    
T  2392 catcatcaatccacaattaagtatacccaaaccatgattcactcacaataacatcagttaacaataacaacatcaatggaatatgaattacatctcattt 2491  T
Q  105 caacaacaacatatcaaaattcactaattgagtataat 142  Q
    ||| || ||||||||||| ||||  |||| ||||||||    
T  2492 caataaaaacatatcaaatttcatcaattaagtataat 2529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 5 - 142
Target Start/End: Complemental strand, 15760370 - 15760233
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacatcagttaatagcaataaccttaatggaacatgaatcacatctcattt 104  Q
    ||||||||||||| ||||| |||||||||| |||| |||||| ||||| |||||||||||| |  || ||| | ||||||| |||||| |||||||||||    
T  15760370 catcatcaatccacaattaagtatacccaattcattattcactcacaataacatcagttaacaataacaacatcaatggaatatgaattacatctcattt 15760271  T
Q  105 caacaacaacatatcaaaattcactaattgagtataat 142  Q
    |||  | ||||||||||| ||||  |||| ||||||||    
T  15760270 caattaaaacatatcaaatttcatcaattaagtataat 15760233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 5 - 58
Target Start/End: Original strand, 16418498 - 16418551
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacat 58  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  16418498 catcatcaatccataattatgtatacccaagtcataattcactcacaacaacat 16418551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 5 - 127
Target Start/End: Complemental strand, 15951047 - 15950925
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacatcagttaatagcaataaccttaatggaacatgaatcacatctcattt 104  Q
    ||||||||||||| ||||| |||||||||| |||| ||||||  |||| | |||||||||| |  ||| || | ||||||| ||||||||||||||||||    
T  15951047 catcatcaatccacaattaagtatacccaaatcatgattcacttacaatagcatcagttaacaataatcacatcaatggaatatgaatcacatctcattt 15950948  T
Q  105 caacaacaacatatcaaaattca 127  Q
    |||  | ||||||||||| ||||    
T  15950947 caatcaaaacatatcaaatttca 15950925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 29 - 136
Target Start/End: Original strand, 13321038 - 13321146
Alignment:
Q  29 acccaagtcataattcacccacaacaacatcagttaatagcaataaccttaatggaacatgaatcacatctcatttcaacaa-caacatatcaaaattca 127  Q
    ||||||||||| ||||| | |||||||||||| |||| | ||||||| | ||| |||||||||||| |||||| |||||||| |||| || |||||||||    
T  13321038 acccaagtcatgattcatcaacaacaacatcaattaacaacaataacatcaattgaacatgaatcatatctcaattcaacaatcaacttagcaaaattca 13321137  T
Q  128 ctaattgag 136  Q
    | |||||||    
T  13321138 ccaattgag 13321146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 107
Target Start/End: Original strand, 7822728 - 7822830
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacatcagttaatagcaataaccttaatggaacatgaatcacatctcattt 104  Q
    ||||||||||||| ||||| |||||||||| |||||||||||  |||| | |||||||||| |  ||  || ||||||||| |||||||||||||| |||    
T  7822728 catcatcaatccacaattaagtatacccaaatcataattcacttacaatagcatcagttaacaataaccacattaatggaatatgaatcacatctctttt 7822827  T
Q  105 caa 107  Q
    |||    
T  7822828 caa 7822830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 107
Target Start/End: Original strand, 7830039 - 7830141
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacatcagttaatagcaataaccttaatggaacatgaatcacatctcattt 104  Q
    ||||||||||||| ||||| |||||||||| |||||||||||  |||| | |||||||||| |  ||  || ||||||||| |||||||||||||| |||    
T  7830039 catcatcaatccacaattaagtatacccaaatcataattcacttacaatagcatcagttaacaataaccacattaatggaatatgaatcacatctctttt 7830138  T
Q  105 caa 107  Q
    |||    
T  7830139 caa 7830141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 107
Target Start/End: Complemental strand, 27101893 - 27101791
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacatcagttaatagcaataaccttaatggaacatgaatcacatctcattt 104  Q
    ||||||||||||| ||||| |||||||||| |||||||||||  |||| | |||||||||| |  ||  || ||||||||| |||||||||||||| |||    
T  27101893 catcatcaatccacaattaagtatacccaaatcataattcacttacaatagcatcagttaacaataaccacattaatggaatatgaatcacatctctttt 27101794  T
Q  105 caa 107  Q
    |||    
T  27101793 caa 27101791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 107
Target Start/End: Complemental strand, 27109241 - 27109139
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacatcagttaatagcaataaccttaatggaacatgaatcacatctcattt 104  Q
    ||||||||||||| ||||| |||||||||| |||||||||||  |||| | |||||||||| |  ||  || ||||||||| |||||||||||||| |||    
T  27109241 catcatcaatccacaattaagtatacccaaatcataattcacttacaatagcatcagttaacaataaccacattaatggaatatgaatcacatctctttt 27109142  T
Q  105 caa 107  Q
    |||    
T  27109141 caa 27109139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 107
Target Start/End: Original strand, 27176433 - 27176535
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacatcagttaatagcaataaccttaatggaacatgaatcacatctcattt 104  Q
    ||||||||||||| ||||| |||||||||| |||||||||||  |||| | |||||||||| |  ||  || ||||||||| |||||||||||||| |||    
T  27176433 catcatcaatccacaattaagtatacccaaatcataattcacttacaatagcatcagttaacaataaccacattaatggaatatgaatcacatctctttt 27176532  T
Q  105 caa 107  Q
    |||    
T  27176533 caa 27176535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 107
Target Start/End: Complemental strand, 38783985 - 38783883
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacatcagttaatagcaataaccttaatggaacatgaatcacatctcattt 104  Q
    ||||||||||||| ||||| |||||||||| |||||||||||  |||| | |||||||||| |  ||  || ||||||||| |||||||||||||| |||    
T  38783985 catcatcaatccacaattaagtatacccaaatcataattcacttacaatagcatcagttaacaataaccacattaatggaatatgaatcacatctctttt 38783886  T
Q  105 caa 107  Q
    |||    
T  38783885 caa 38783883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 5 - 58
Target Start/End: Complemental strand, 10000625 - 10000572
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacat 58  Q
    ||||||||||||||||||| |||||||||||| ||||||||| |||||||||||    
T  10000625 catcatcaatccataattaagtatacccaagttataattcactcacaacaacat 10000572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 5 - 43
Target Start/End: Original strand, 15852456 - 15852494
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataatt 43  Q
    |||||||||||||||||||||||||||||||||||||||    
T  15852456 catcatcaatccataattatgtatacccaagtcataatt 15852494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 5 - 135
Target Start/End: Complemental strand, 47481294 - 47481164
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacatcagttaatagcaataaccttaatggaacatgaatcacatctcattt 104  Q
    |||||||||| ||| | |||| |||||||||  || ||||| | |||| ||||||| |||| ||| ||||| | ||| ||||| |||||| | |||| ||    
T  47481294 catcatcaattcatgaatatgcatacccaagcaatgattcatcaacaaaaacatcaattaagagcgataacatcaattgaacaagaatcataactcaatt 47481195  T
Q  105 caacaacaacatatcaaaattcactaattga 135  Q
    |||||||||| || |||||||||| ||||||    
T  47481194 caacaacaacttagcaaaattcaccaattga 47481164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 136
Target Start/End: Complemental strand, 11580985 - 11580871
Alignment:
Q  22 tatgtatacccaagtcataattcacccacaacaacatcagttaatagcaataaccttaatggaacatgaatcacatctcatttcaacaacaacatatcaa 121  Q
    ||||||||||||||  || ||||| | || ||||||||| |||| ||| ||||| | ||| ||||| |||||| | |||| |  ||||||||| || |||    
T  11580985 tatgtatacccaagcaatgattcatcaaccacaacatcaattaacagccataacatcaattgaacaagaatcataactcaatctaacaacaacttagcaa 11580886  T
Q  122 aattcactaattgag 136  Q
    ||||||| |||||||    
T  11580885 aattcaccaattgag 11580871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 5 - 58
Target Start/End: Original strand, 20254312 - 20254365
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacat 58  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20254312 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacat 20254365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 10 - 127
Target Start/End: Original strand, 46523394 - 46523511
Alignment:
Q  10 tcaatccataattatgtatacccaagtcataattcacccacaacaacatcagttaatagcaataaccttaatggaacatgaatcacatctcatttcaaca 109  Q
    |||||||||||||| ||||||||||||||| |||||| ||||||| |||||||||| |  || ||| | ||||||| |||||| ||||||||||||||      
T  46523394 tcaatccataattaagtatacccaagtcatgattcactcacaacagcatcagttaacaataacaacatcaatggaatatgaattacatctcatttcaatc 46523493  T
Q  110 acaacatatcaaaattca 127  Q
    | ||||||||||| ||||    
T  46523494 aaaacatatcaaatttca 46523511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 5 - 127
Target Start/End: Complemental strand, 38055347 - 38055225
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacatcagttaatagcaataaccttaatggaacatgaatcacatctcattt 104  Q
    ||||||||||||| ||||| |||||||||| |||||||||||  |||| | |||||||||| |  ||  || ||||||||| |||||||||||||| |||    
T  38055347 catcatcaatccacaattaagtatacccaaatcataattcacttacaatagcatcagttaacaataaccacattaatggaatatgaatcacatctctttt 38055248  T
Q  105 caacaacaacatatcaaaattca 127  Q
    |||  | ||||||||||| ||||    
T  38055247 caatcaaaacatatcaaatttca 38055225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 107
Target Start/End: Original strand, 17004638 - 17004740
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacatcagttaatagcaataaccttaatggaacatgaatcacatctcattt 104  Q
    ||||||||||||| ||||| |||||||||| |||||||||||  |||| | |||||||||| |  ||  || ||||||||| |||||||||||||| |||    
T  17004638 catcatcaatccacaattaagtatacccaaatcataattcacttacaatagcatcagttaacaataaccacattaatggaatatgaatcacatctctttt 17004737  T
Q  105 caa 107  Q
    |||    
T  17004738 caa 17004740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 127
Target Start/End: Complemental strand, 18060014 - 18059892
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacatcagttaatagcaataaccttaatggaacatgaatcacatctcattt 104  Q
    ||||||||||||| ||||| |||||||||| |||||||||||  |||| | |||||||| | |  ||  || | ||||||| ||||||||||||||||||    
T  18060014 catcatcaatccacaattaagtatacccaaatcataattcacttacaatagcatcagttgacaataaccacatcaatggaatatgaatcacatctcattt 18059915  T
Q  105 caacaacaacatatcaaaattca 127  Q
    |||  | ||||||||||| ||||    
T  18059914 caatcaaaacatatcaaatttca 18059892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 5 - 58
Target Start/End: Original strand, 22035448 - 22035501
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacat 58  Q
    ||||||||||||||||||| |||||||||||| ||||||||| |||||||||||    
T  22035448 catcatcaatccataattaagtatacccaagttataattcactcacaacaacat 22035501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 58
Target Start/End: Complemental strand, 7641189 - 7641136
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacat 58  Q
    ||||||||||||||||||| ||| |||||||| ||||||||| |||||||||||    
T  7641189 catcatcaatccataattaagtacacccaagttataattcactcacaacaacat 7641136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 5 - 58
Target Start/End: Original strand, 7210 - 7263
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacat 58  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  7210 catcatcaatccataattatgtatacccaagtcataattcactcacaacaacat 7263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0195 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: scaffold0195
Description:

Target: scaffold0195; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 5 - 136
Target Start/End: Original strand, 19206 - 19337
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacatcagttaatagcaataaccttaatggaacatgaatcacatctcattt 104  Q
    |||||||||| ||| | |||| |||||||||  || ||||| | |||||||||||| |||| ||||||||| | ||| ||||| |||||| | |||| ||    
T  19206 catcatcaattcatgaatatgcatacccaagcaatgattcatcaacaacaacatcaattaacagcaataacatcaattgaacaggaatcataactcaatt 19305  T
Q  105 caacaacaacatatcaaaattcactaattgag 136  Q
    |||||||||| || |||||||||| |||||||    
T  19306 caacaacaacttagcaaaattcaccaattgag 19337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0195; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 5 - 136
Target Start/End: Original strand, 21290 - 21421
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacatcagttaatagcaataaccttaatggaacatgaatcacatctcattt 104  Q
    |||||||||| ||| | |||| |||||||||  || ||||| | |||||||||||| |||| ||||||||| | ||| ||||| |||||| | |||| ||    
T  21290 catcatcaattcatgaatatgcatacccaagcaatgattcatcaacaacaacatcaattaacagcaataacatcaattgaacaggaatcataactcaatt 21389  T
Q  105 caacaacaacatatcaaaattcactaattgag 136  Q
    |||||||||| || |||||||||| |||||||    
T  21390 caacaacaacttagcaaaattcaccaattgag 21421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 5 - 127
Target Start/End: Original strand, 39646 - 39768
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacatcagttaatagcaataaccttaatggaacatgaatcacatctcattt 104  Q
    ||||||||||||| ||||| |||||||||| |||| |||||| ||||| | |||||||||| |  || ||| | |||| || |||||| |||||||||||    
T  39646 catcatcaatccacaattaagtatacccaaatcatgattcactcacaatagcatcagttaacaataacaacatcaatgaaatatgaataacatctcattt 39745  T
Q  105 caacaacaacatatcaaaattca 127  Q
    ||| || ||||||||||| ||||    
T  39746 caaaaaaaacatatcaaatttca 39768  T

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Target: scaffold0107; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 107
Target Start/End: Original strand, 31309 - 31411
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacatcagttaatagcaataaccttaatggaacatgaatcacatctcattt 104  Q
    ||||||||||||| ||||| |||||||||| |||||||||||  |||| | |||||||||| |  ||  || ||||||||| |||||||||||||| |||    
T  31309 catcatcaatccacaattaagtatacccaaatcataattcacttacaatagcatcagttaacaataaccacattaatggaatatgaatcacatctctttt 31408  T
Q  105 caa 107  Q
    |||    
T  31409 caa 31411  T

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Target: scaffold0076 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 107
Target Start/End: Original strand, 39103 - 39205
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacatcagttaatagcaataaccttaatggaacatgaatcacatctcattt 104  Q
    ||||||||||||| ||||| |||||||||| |||||||||||  |||| | |||||||||| |  ||  || ||||||||| |||||||||||||| |||    
T  39103 catcatcaatccacaattaagtatacccaaatcataattcacttacaatagcatcagttaacaataaccacattaatggaatatgaatcacatctctttt 39202  T
Q  105 caa 107  Q
    |||    
T  39203 caa 39205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 127
Target Start/End: Complemental strand, 154263 - 154141
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacatcagttaatagcaataaccttaatggaacatgaatcacatctcattt 104  Q
    ||||||||||||| ||||| |||||||||| |||| |||||||||||| | ||| |||||| |  ||  || | ||||||| |||| |||||||||||||    
T  154263 catcatcaatccacaattaagtatacccaaatcatgattcacccacaatagcataagttaacaataaccacatcaatggaatatgattcacatctcattt 154164  T
Q  105 caacaacaacatatcaaaattca 127  Q
    |||  | ||||||||||| ||||    
T  154163 caatcaaaacatatcaaatttca 154141  T

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Target: scaffold1666 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold1666
Description:

Target: scaffold1666; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 5 - 142
Target Start/End: Complemental strand, 252 - 115
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacatcagttaatagcaataaccttaatggaacatgaatcacatctcattt 104  Q
    ||||||||||||| ||||| |||||||||| |||| |||||| ||||| | |||||||||| |  ||  || | |||| || |||||| |||||||||||    
T  252 catcatcaatccacaattaagtatacccaaatcatgattcactcacaatagcatcagttaacaataactacatcaatgtaatatgaattacatctcattt 153  T
Q  105 caacaacaacatatcaaaattcactaattgagtataat 142  Q
    |||  | ||||||||||| ||||  |||| ||||||||    
T  152 caattaaaacatatcaaatttcatcaattaagtataat 115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0183 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0183
Description:

Target: scaffold0183; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 58
Target Start/End: Original strand, 6598 - 6651
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacat 58  Q
    ||||||||||||| ||||| |||||||||||| ||||||||| |||||||||||    
T  6598 catcatcaatccacaattaagtatacccaagttataattcactcacaacaacat 6651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 58
Target Start/End: Complemental strand, 24004 - 23951
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacat 58  Q
    ||||||||||||||||||| ||| |||||||| ||||||||| |||||||||||    
T  24004 catcatcaatccataattaagtacacccaagttataattcactcacaacaacat 23951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0075
Description:

Target: scaffold0075; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 128
Target Start/End: Complemental strand, 34724 - 34600
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacatcagttaatagcaataaccttaa-tggaacatgaatcacatctcatt 103  Q
    |||||||||||||| | |||| ||||||||||  | ||||| | ||||||||||||  ||| | ||||||| | || |  ||||||||||| |||||| |    
T  34724 catcatcaatccatgaatatgcatacccaagtagtgattcatcaacaacaacatcaaataacaacaataacatcaattaaaacatgaatcatatctcaat 34625  T
Q  104 tcaacaacaacatatcaaaattcac 128  Q
    ||||||||||| || ||||||||||    
T  34624 tcaacaacaacttagcaaaattcac 34600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0132 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0132
Description:

Target: scaffold0132; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 136
Target Start/End: Original strand, 13506 - 13637
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacatcagttaatagcaataaccttaatggaacatgaatcacatctcattt 104  Q
    |||| ||||| ||| | |||| ||||||||||||| ||||| | |||||||||||| |||| | ||| ||| | ||| |||||||  || ||||  | ||    
T  13506 catcgtcaattcatgaatatgcatacccaagtcatgattcatcaacaacaacatcaattaacaacaacaacatcaattgaacatggttctcatcataatt 13605  T
Q  105 caacaacaacatatcaaaattcactaattgag 136  Q
    ||||||||||||| |||||||||  |||||||    
T  13606 caacaacaacatagcaaaattcatcaattgag 13637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0213 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0213
Description:

Target: scaffold0213; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 5 - 127
Target Start/End: Original strand, 29162 - 29284
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacatcagttaatagcaataaccttaatggaacatgaatcacatctcattt 104  Q
    |||||||||| || ||||| ||||| |||| |||||||||||  |||| ||||| | |||| |  ||  || | ||||||| ||||||||||||||||||    
T  29162 catcatcaatacacaattaagtataaccaaatcataattcactaacaataacataaattaacaataaccacatcaatggaatatgaatcacatctcattt 29261  T
Q  105 caacaacaacatatcaaaattca 127  Q
    |||  | ||||||||||| ||||    
T  29262 caatcaaaacatatcaaatttca 29284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0125 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0125
Description:

Target: scaffold0125; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 5 - 135
Target Start/End: Original strand, 41648 - 41778
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacatcagttaatagcaataaccttaatggaacatgaatcacatctcattt 104  Q
    |||||||||| ||| | |||| |||||||||  || ||||| | |||||||||||| |||| | ||| ||| | ||| |||||||  || ||||  | ||    
T  41648 catcatcaattcatgaatatgcatacccaagcaatgattcatcaacaacaacatcatttaacaacaacaacatcaattgaacatggttctcatcataatt 41747  T
Q  105 caacaacaacatatcaaaattcactaattga 135  Q
    ||||||||||||| |||||||||| ||||||    
T  41748 caacaacaacatagcaaaattcaccaattga 41778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0761 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0761
Description:

Target: scaffold0761; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 142
Target Start/End: Complemental strand, 1831 - 1694
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacatcagttaatagcaataaccttaatggaacatgaatcacatctcattt 104  Q
    ||||||||||||| ||||| |||||||||| |||| |||||| ||||| | |||||||||| |  || ||| | |||   | |||| | |||||||||||    
T  1831 catcatcaatccacaattaagtatacccaaatcatgattcactcacaatagcatcagttaacaataacaacatcaattttatatgatttacatctcattt 1732  T
Q  105 caacaacaacatatcaaaattcactaattgagtataat 142  Q
    |||  | ||||||||||| ||||  |||| ||||||||    
T  1731 caatcaaaacatatcaaatttcatcaattaagtataat 1694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0529 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0529
Description:

Target: scaffold0529; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 136
Target Start/End: Original strand, 3042 - 3094
Alignment:
Q  84 aacatgaatcacatctcatttcaacaacaacatatcaaaattcactaattgag 136  Q
    ||||||||||| |||||| |||||||||||| || |||||||||| |||||||    
T  3042 aacatgaatcatatctcaattcaacaacaacttagcaaaattcaccaattgag 3094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 136
Target Start/End: Original strand, 107747 - 107878
Alignment:
Q  5 catcatcaatccataattatgtatacccaagtcataattcacccacaacaacatcagttaatagcaataaccttaatggaacatgaatcacatctcattt 104  Q
    |||||||||||||| | |||| | |||||||  || ||||| | |  ||||||||| |||| | | ||||| | ||| ||||| |||||| ||||||  |    
T  107747 catcatcaatccatgaatatgcaaacccaagcaattattcatcaatcacaacatcaattaacatccataacatcaattgaacaagaatcaaatctcaaat 107846  T
Q  105 caacaacaacatatcaaaattcactaattgag 136  Q
     ||||||||| ||||||||||||| |||||||    
T  107847 taacaacaacttatcaaaattcaccaattgag 107878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0151 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0151
Description:

Target: scaffold0151; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 133
Target Start/End: Complemental strand, 22591 - 22542
Alignment:
Q  84 aacatgaatcacatctcatttcaacaacaacatatcaaaattcactaatt 133  Q
    ||||||| |||||||||| ||||||||||||||| || |||||| |||||    
T  22591 aacatgattcacatctcaattcaacaacaacatagcacaattcaataatt 22542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0390 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0390
Description:

Target: scaffold0390; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 60
Target Start/End: Complemental strand, 16090 - 16034
Alignment:
Q  5 catcatcaatccat-aattatgtatacccaagtcataattcacccacaacaacatca 60  Q
    |||||||||| ||| ||||||| ||||||||||||||| ||||| ||||||| ||||    
T  16090 catcatcaattcatgaattatgaatacccaagtcataaatcaccaacaacaatatca 16034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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