View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0937_low_37 (Length: 208)
Name: NF0937_low_37
Description: NF0937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0937_low_37 |
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Alignment Details
Target: chr5 (Bit Score: 76; Significance: 2e-35; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 37525889 - 37525964
Alignment:
| Q |
1 |
caagcttcatggtttaaatgctcaatggagtgaagagaagaagcaaagttacataaggcatgcaattcgggagtat |
76 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37525889 |
caagcttcatggtttaaatgctcaatggagtgaagagaagaagcaaagttacataaggcatgcaattcgggagtat |
37525964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 37588050 - 37588125
Alignment:
| Q |
1 |
caagcttcatggtttaaatgctcaatggagtgaagagaagaagcaaagttacataaggcatgcaattcgggagtat |
76 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37588050 |
caagcttcatggtttaaatgctcaatggagtgaagagaagaagcaaagttacataaggcatgcaattcgggagtat |
37588125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 37690326 - 37690401
Alignment:
| Q |
1 |
caagcttcatggtttaaatgctcaatggagtgaagagaagaagcaaagttacataaggcatgcaattcgggagtat |
76 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37690326 |
caagcttcatggtttaaatgctcaatggagtgaagagaagaagcaaagttacataaggcatgcaattcgggagtat |
37690401 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 37618624 - 37618699
Alignment:
| Q |
1 |
caagcttcatggtttaaatgctcaatggagtgaagagaagaagcaaagttacataaggcatgcaattcgggagtat |
76 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37618624 |
caagcttcatggtgtaaatgctcaatggagtgaagagaagaagcaaagttacataaggcatgcaattcgggagtat |
37618699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 37794392 - 37794467
Alignment:
| Q |
1 |
caagcttcatggtttaaatgctcaatggagtgaagagaagaagcaaagttacataaggcatgcaattcgggagtat |
76 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37794392 |
caagcttcatggtgtaaatgctcaatggagtgaagagaagaagcaaagttacataaggcatgcaattcgggagtat |
37794467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 37787645 - 37787718
Alignment:
| Q |
1 |
caagcttcatggtttaaatgctcaatggagtgaagagaagaagcaaagttacataaggcatgcaattcgggagt |
74 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||||| |||| |
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| T |
37787645 |
caagcttcatggtttaaatgctcaatgggctgaagagaagaagctaagttacatgaggcatgcaattcgagagt |
37787718 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 76; Significance: 2e-35; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 14548412 - 14548487
Alignment:
| Q |
1 |
caagcttcatggtttaaatgctcaatggagtgaagagaagaagcaaagttacataaggcatgcaattcgggagtat |
76 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14548412 |
caagcttcatggtttaaatgctcaatggagtgaagagaagaagcaaagttacataaggcatgcaattcgggagtat |
14548487 |
T |
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