View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0937_low_38 (Length: 203)
Name: NF0937_low_38
Description: NF0937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0937_low_38 |
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Alignment Details
Target: chr8 (Bit Score: 170; Significance: 2e-91; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 1092846 - 1093019
Alignment:
| Q |
1 |
caacatggtggtgaaaaacacaaaccaattagaggaaaccactaattccacttatgatagagaagctgaagtgaaagcttttgatgattcaaaagtaggt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1092846 |
caacatggtggtgaaaaacacaaaccaattagaggaaaccactaattccacttatgatagagaagctgaagtgaaagcttttgatgattcaaaagtaggt |
1092945 |
T |
|
| Q |
101 |
gtcaaaggtttggtggagtctggggtgtcgaagattccacgcatgttccatactgggaagatggaaatctccga |
174 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
1092946 |
gtcaaaggtttggtggagtctggggtgtcgaaaattccacgcatgttccatactgggaagatggaaatctccga |
1093019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 147
Target Start/End: Complemental strand, 25225169 - 25225067
Alignment:
| Q |
45 |
attccacttatgatagagaagctgaagtgaaagcttttgatgattcaaaagtaggtgtcaaaggtttggtggagtctggggtgtcgaagattccacgcat |
144 |
Q |
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||||||| ||||||||| | | |||||||||||||||||||||||| ||| | ||||| | |||| | ||||| ||||||| | ||||| || ||||| |
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| T |
25225169 |
attccacatatgatagaaatgttgaagtgaaagcttttgatgattcgaaacttggtgttagaggtcttatggagcgtggggtgacaaagatcccgcgcat |
25225070 |
T |
|
| Q |
145 |
gtt |
147 |
Q |
| |
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||| |
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| T |
25225069 |
gtt |
25225067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 147
Target Start/End: Original strand, 26168213 - 26168315
Alignment:
| Q |
45 |
attccacttatgatagagaagctgaagtgaaagcttttgatgattcaaaagtaggtgtcaaaggtttggtggagtctggggtgtcgaagattccacgcat |
144 |
Q |
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||||||| ||||||||| | | |||| |||||| |||||||||||||||| | ||||| | |||| | ||||| ||||||| | ||||| |||||||| |
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| T |
26168213 |
attccacatatgatagaaatgatgaattgaaagtttttgatgattcaaaacttggtgtaagaggtcttatggagcgtggggtgacaaagatcccacgcat |
26168312 |
T |
|
| Q |
145 |
gtt |
147 |
Q |
| |
|
||| |
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|
| T |
26168313 |
gtt |
26168315 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 147
Target Start/End: Original strand, 26395846 - 26395926
Alignment:
| Q |
67 |
tgaagtgaaagcttttgatgattcaaaagtaggtgtcaaaggtttggtggagtctggggtgtcgaagattccacgcatgtt |
147 |
Q |
| |
|
|||||||||||||||||| || |||||||| ||||| | |||| | |||||| |||||| | ||||| ||||||||||| |
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| T |
26395846 |
tgaagtgaaagcttttgaagaatcaaaagttggtgtaagaggtcttgtggagagtggggtaacaaagatcccacgcatgtt |
26395926 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 99; Significance: 5e-49; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 5 - 171
Target Start/End: Original strand, 29462586 - 29462752
Alignment:
| Q |
5 |
atggtggtgaaaaacacaaaccaattagaggaaaccactaattccacttatgatagagaagctgaagtgaaagcttttgatgattcaaaagtaggtgtca |
104 |
Q |
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|||||||| ||||| ||||||||||| ||||| ||| | ||| |||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||| |
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| T |
29462586 |
atggtggtagaaaactcaaaccaattaaaggaatccagtgatttcacttatgatagagaagccgaagttaaagcttttgatgattcaaaagttggtgtca |
29462685 |
T |
|
| Q |
105 |
aaggtttggtggagtctggggtgtcgaagattccacgcatgttccatactgggaagatggaaatctc |
171 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||||||||||||| | ||| ||||| |||||||||| |
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| T |
29462686 |
aaggtttggtggattctggggtgtcaaagattccacgcatgttctacactaggaagttggaaatctc |
29462752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 5 - 152
Target Start/End: Original strand, 19844341 - 19844488
Alignment:
| Q |
5 |
atggtggtgaaaaacacaaaccaattagaggaaaccactaattccacttatgatagagaagctgaagtgaaagcttttgatgattcaaaagtaggtgtca |
104 |
Q |
| |
|
|||||||| |||||| |||||||| |||| || ||||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||| | |
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| T |
19844341 |
atggtggtaaaaaactcaaaccaagtagaaaaatccactaattccacttatgatagatacaatgaagtgaaagcttttgatgattcaaaagctggtgtga |
19844440 |
T |
|
| Q |
105 |
aaggtttggtggagtctggggtgtcgaagattccacgcatgttccata |
152 |
Q |
| |
|
||||||||||||||| || ||||||||||| |||| |||||||||| |
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| T |
19844441 |
gaggtttggtggagtccggagtgtcgaagatcccacagatgttccata |
19844488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 5 - 153
Target Start/End: Original strand, 19890198 - 19890346
Alignment:
| Q |
5 |
atggtggtgaaaaacacaaaccaattagaggaaaccactaattccacttatgatagagaagctgaagtgaaagcttttgatgattcaaaagtaggtgtca |
104 |
Q |
| |
|
|||||||| ||||||||||| || ||||||||| | ||||||||||||||||||||| || | ||||||||| ||||||||||||||||| ||||||| |
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| T |
19890198 |
atggtggtaaaaaacacaaatcagttagaggaatctactaattccacttatgatagaaaaacagaagtgaaaaattttgatgattcaaaagctggtgtca |
19890297 |
T |
|
| Q |
105 |
aaggtttggtggagtctggggtgtcgaagattccacgcatgttccatac |
153 |
Q |
| |
|
||||||||||||| ||||||||| ||||| || ||||| || ||||| |
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| T |
19890298 |
gaggtttggtggagcatggggtgtcaaagatcccgcgcatttttcatac |
19890346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 89; Significance: 4e-43; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 49465599 - 49465435
Alignment:
| Q |
1 |
caacatggtggtgaaaaacacaaaccaattagaggaaaccactaattccacttatgatagagaagctgaagtgaaagcttttgatgattcaaaagtaggt |
100 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||| || ||| |
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| T |
49465599 |
caacatggtggtaaaaaacacaaatcaattagaggaagccactgattccacttatgatagaaaagctgaagtgaaagcttttgatgattcacgagcaggc |
49465500 |
T |
|
| Q |
101 |
gtcaaaggtttggtggagtctggggtgtcgaagattccacgcatgttccatactgggaagatgga |
165 |
Q |
| |
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||||| |||||||| ||||||||||| || ||||| |||||| | |||||| | |||||| |||| |
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|
| T |
49465499 |
gtcaatggtttggttgagtctggggtttcaaagatcccacgctttttccatgccgggaagttgga |
49465435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 45 - 147
Target Start/End: Original strand, 8348970 - 8349072
Alignment:
| Q |
45 |
attccacttatgatagagaagctgaagtgaaagcttttgatgattcaaaagtaggtgtcaaaggtttggtggagtctggggtgtcgaagattccacgcat |
144 |
Q |
| |
|
||||||| ||||||||| | |||||||||||||||||||||||||||||| | ||||| | |||| | ||||| |||||| | ||||| |||||||| |
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|
| T |
8348970 |
attccacatatgatagaaatgctgaagtgaaagcttttgatgattcaaaacttggtgttagaggtcttatggagcgtggggtaacaaagatcccacgcat |
8349069 |
T |
|
| Q |
145 |
gtt |
147 |
Q |
| |
|
||| |
|
|
| T |
8349070 |
gtt |
8349072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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