View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0937_low_4 (Length: 566)
Name: NF0937_low_4
Description: NF0937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0937_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 507; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 4 - 554
Target Start/End: Original strand, 4307456 - 4308006
Alignment:
| Q |
4 |
tgtttaactataactaactattgaaacttccataactgtcaaaacagttaggtagttactaaactctgcaattacttgatacacaagcaattgtcttaag |
103 |
Q |
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| T |
4307456 |
tgtttaactataactaactattgtaacttccataactgtcaaaagagttagttagttactagactctgcaattacttgttacacaagtaattgtcttaag |
4307555 |
T |
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| Q |
104 |
ctaataactaatcaaactttaacacagatactcattttctaaactcagaatcatccttcccaactcacccaccatctctgatttgcttctattgacacag |
203 |
Q |
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| T |
4307556 |
ctaatatctaatcaaactttaacacagatactcattttctacactcagaatcatcctccccaactcacccaccatctctgatttgcttctattgacacag |
4307655 |
T |
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| Q |
204 |
ttgagatattaattttcttcacgctactctccagctcaacgcagttgtaatttaatgcttgaaaagttaggttggtcgtttgtttgtttaattcaaaata |
303 |
Q |
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| T |
4307656 |
ttgagataataattttcttcacgctactctccagctcaacgcagttgtaatttaatgctcgaaaagttaggttggtcgtttgtttgtttaattcaaaata |
4307755 |
T |
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| Q |
304 |
aaggaatttattgcagacaatgttgagatgttgaacttacgggctaacgtttcagtcacagttaggtttccaactgtgatatttccaacaccaacattga |
403 |
Q |
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| T |
4307756 |
aaggaatttattgcagacaatgttgagatgttgaacttacgggctaacgtttcagtcacagttaggtttccaactgtgatatttccaacaccaacattga |
4307855 |
T |
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| Q |
404 |
tgtatttctttcaaaaccactttgcgcgatatttatttagcaagttttttcttttgtcatggaatggtttgttgcagtaaaaaggagcataagagagaat |
503 |
Q |
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| T |
4307856 |
tgtatttctttcaaaaccactttgcgcgatatttatttagcaagttttttcttttgtcatggaatggtttgttgcagtaaaaaggagcataagagagaat |
4307955 |
T |
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| Q |
504 |
gtaatcattgtgttgtattgaaaatggagaaacattactaaaattgagtat |
554 |
Q |
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| T |
4307956 |
gtaatcattgtgttgtattgaaaatggagaaacattactaaaattgagtat |
4308006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 6 - 60
Target Start/End: Original strand, 18096385 - 18096436
Alignment:
| Q |
6 |
tttaactataactaactattgaaacttccataactgtcaaaacagttaggtagtt |
60 |
Q |
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| T |
18096385 |
tttaactataactaactgt---aacttccataacagtcaaaacagttagttagtt |
18096436 |
T |
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