View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0937_low_5 (Length: 555)
Name: NF0937_low_5
Description: NF0937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0937_low_5 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 500; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 1 - 555
Target Start/End: Complemental strand, 35805495 - 35804939
Alignment:
| Q |
1 |
caaggaaaaacaaaagagaagcttaaaattaatatgatataatgcatgtttgaggtatctagtgaaataagtagtgaataaaattggatgtgtttagatg |
100 |
Q |
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| T |
35805495 |
caaggaaaaacaaaagagaagctaaaaattaatatgatataatgcatgtttgaggcatctagtgaaataagtagtgaataaaattggatgtgtttagatg |
35805396 |
T |
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| Q |
101 |
tctagggatgtcataaataagtaatggtgttaacattttttgtcttttgtatatgagaaagtgttgcatacaaaatttgaattttaagtttcaagttcca |
200 |
Q |
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| T |
35805395 |
tctagggatgtaataaataagtaatggtgttaacattttttgtcttttgtatatgagaaagtgttacatacaaaatttgaattttaagtttcaagttcca |
35805296 |
T |
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| Q |
201 |
tggagtaagttgaatttcaaacttacatttgtgccagtaaatttgtcaacttaaaacttgttaaggatctaattcaagttatagactaatctttgaattt |
300 |
Q |
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| T |
35805295 |
tggagtaagtcgaatttcaaacttacatttgtgccagtaaatttgtcaacttaaaacttgttaaggatctaattcaagttatagactaatctttgaattt |
35805196 |
T |
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| Q |
301 |
atttgctgaagtgataaattttactataaacaaaaagggagaagagaatcttaatccttatgtttctgtttaaacagaaagagtaggaaatgtttgtttt |
400 |
Q |
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| T |
35805195 |
atttgctgaagtgataaattttaccat-aacaaaaagggagaagagaatcttaatccttttgtttctgtttaaacagaaagagtagggaatgtttgtttt |
35805097 |
T |
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| Q |
401 |
atggaagagaaatttattctcaagaataaataatatcatgaaaaagaagaacgagaatcttgcacaa---tgtttgttttagaggaattccattttaatg |
497 |
Q |
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| T |
35805096 |
atggaagagaaatttattctcaagaataaataatatcatgaaaaagaagaacgagaatcttgcacaatgttgtttgttttagaggaattccattttaatg |
35804997 |
T |
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| Q |
498 |
caatagaaaaacttttttcccacgtgaagagaaaactcaccgtaccaccaactttttt |
555 |
Q |
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| T |
35804996 |
caatagaaaaacttttttcccacgtgaagagaaaactcaccgtaccatcaactttttt |
35804939 |
T |
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