View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0937_low_8 (Length: 494)
Name: NF0937_low_8
Description: NF0937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0937_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 77 - 398
Target Start/End: Original strand, 33886878 - 33887199
Alignment:
| Q |
77 |
atcataggacatgggagaggattctaaaattcattactcgcaagaggtaataattaccgtttacttgaataccacatttatagttacttactttggactc |
176 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
33886878 |
atcacaggacatgggagaggattctaaaattcattactcgcaagaggtaataattaccgtttacttgaataccacatttatagttacttgctttggactc |
33886977 |
T |
|
| Q |
177 |
taactataaagcaccgatacacacactagatatgtctttacattgacacgtcgacattgataataatttgagaaaattgaatggttgagtttaaccacgc |
276 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
33886978 |
taactataaagcaccgatacagacactagatatgtctttacattgacacgtcgacattgataataatttgagaaaattgaatggttgagtttaactacgc |
33887077 |
T |
|
| Q |
277 |
gtatcaatgtcatgtctgacaccaaacacgccttgaatctaaagtgtccgctacatagtatataatgcattttcttttgtctttttcagggatcttaatt |
376 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33887078 |
gtatcaatgtcatgtctgacaccaaacacgccttgaatctaaagtgtccgctacatagtatataatgcattttcttttgtctttttcagggatcttaatt |
33887177 |
T |
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| Q |
377 |
tcttgatcacagacatgactag |
398 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
33887178 |
tcttgatcacagacatgactag |
33887199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 253
Target Start/End: Original strand, 953687 - 953720
Alignment:
| Q |
220 |
tgacacgtcgacattgataataatttgagaaaat |
253 |
Q |
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| T |
953687 |
tgacacgtcgacattgataatgatttgagaaaat |
953720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 221 - 253
Target Start/End: Complemental strand, 13211348 - 13211316
Alignment:
| Q |
221 |
gacacgtcgacattgataataatttgagaaaat |
253 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
13211348 |
gacacgtcgacattgataataatttgagaaaat |
13211316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 253
Target Start/End: Complemental strand, 10760909 - 10760876
Alignment:
| Q |
220 |
tgacacgtcgacattgataataatttgagaaaat |
253 |
Q |
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||||||||||||| |||||||||||||||||||| |
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| T |
10760909 |
tgacacgtcgacactgataataatttgagaaaat |
10760876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 222 - 252
Target Start/End: Original strand, 2321923 - 2321953
Alignment:
| Q |
222 |
acacgtcgacattgataataatttgagaaaa |
252 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
2321923 |
acacgtcgacattgataataatttgagaaaa |
2321953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 222 - 254
Target Start/End: Original strand, 41600891 - 41600923
Alignment:
| Q |
222 |
acacgtcgacattgataataatttgagaaaatt |
254 |
Q |
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||||||| ||||||||||||||||||||||||| |
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| T |
41600891 |
acacgtcaacattgataataatttgagaaaatt |
41600923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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