View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0938-Insertion-1 (Length: 1111)

Name: NF0938-Insertion-1
Description: NF0938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0938-Insertion-1
NF0938-Insertion-1
[»] chr3 (1 HSPs)
chr3 (50-903)||(52844731-52845584)


Alignment Details
Target: chr3 (Bit Score: 838; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 838; E-Value: 0
Query Start/End: Original strand, 50 - 903
Target Start/End: Complemental strand, 52845584 - 52844731
Alignment:
Q  50 aagaagaaggaagttctaccttagttttcggattacggttccgagggttagtaaactgcgatttatgtgactaccttctctcaaccttgtgcctgctgat 149  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52845584 aagaagaaggaagttctaccttagttttcggattacggttccgagggttagtaaactgcgatttatgtgactaccttctctcaaccttgtgcctgctgat 52845485  T
Q  150 aatgcttgagaagcacgctcacttcctgccagatcaacaaaattctgtgcaaagaaactaactcttcatcatttcatcaaccaaacaatttaaacgcaca 249  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  52845484 aatgcttgagaagcacgctcacttcctgccagatcaacaaaattctgtgcaaagaaactaactcttcttcatttcatcaaccaaacaatttaaacacaca 52845385  T
Q  250 caccaaaggggtaaggatcttaccacactggcaaaaagtgcgccagatcttgcagtgcctacaaaatcactaggattgctttcaagtgtctgcagaaaac 349  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52845384 caccaaaggggtaaggatcttaccacactggcaaaaagtgcgccagatcttgcagtgcctacaaaatcactaggattgctttcaagtgtctgcagaaaac 52845285  T
Q  350 cataaactcattattttgggaaattcaggagtaaaatacgttactttaatctcaattactatgttgggaaaattcaggagtaaaatacgatattttaatc 449  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52845284 cataaactcatcattttgggaaattcaggagtaaaatacgttactttaatctcaattactatgttgggaaaattcaggagtaaaatacgatattttaatc 52845185  T
Q  450 tcaattgctatgtaatttagtgataaagtgaataccaatcgaagaatttgatgagatctggagcttgtttcattcatggcagtttcttctgttgtccttt 549  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52845184 tcaattgctatgtaatttagtgataaagtgaataccaatcgaagaatttgatgagatctggagcttgtttcattcatggcagtttcttctgttgtccttt 52845085  T
Q  550 cagctgcaagataatgatatggcttgaaatggagcatcagaaaatatcaaaagcattataagaaaaacactaactagacctagtacctgcacattttgaa 649  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52845084 cagctgcaagataatgatatggcttgaaatggagcatcagaaaatatcaaaagcattataagaaaaacactaactagacctagtacctgcacattttgaa 52844985  T
Q  650 ataagttgctgcaattgactcctctctgtcagagtctcctcagtaagtttctcaacaacagtccctttctgttcaagggacatagattctcaaccattcg 749  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52844984 ataagttgctgcaattgactcctctctgtcagagtctcctcagtaagtttctcaacaacagtccctttctgttcaagggacatagattctcaaccattcg 52844885  T
Q  750 aaagaactaaagccagaaagtcttgaccattattatataataaggaaaatatcctattaagtttacctctggatcatctaggagtcttagtgtggtagca 849  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52844884 aaagaactaaagccagaaagtcttgaccattattatataataaggaaaatatcctattaagtttacctctggatcatctaggagtcttagtgtggtagca 52844785  T
Q  850 tttgaattaagaaggtctctaacagcttcattatatatttctaaggcagagaac 903  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  52844784 tttgaattaagaaggtctctaacagcttcattatatatttccaaggcagagaac 52844731  T

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