View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0938-Insertion-10 (Length: 438)
Name: NF0938-Insertion-10
Description: NF0938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0938-Insertion-10 |
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Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-131; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 152 - 425
Target Start/End: Complemental strand, 28922642 - 28922370
Alignment:
| Q |
152 |
tgcatctgtcattttctttcacattgtcatgctgtgatttgtcattgaattaagattctgtctacagtgacgacttagaagccaaacatactggctggtg |
251 |
Q |
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| T |
28922642 |
tgcatctgtcattttctttcacattgtcatgctgtgatttgtcattgcattaagattctgtctacagtgacgacttagaagccaaacatactggctggtg |
28922543 |
T |
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| Q |
252 |
ttaataatggcattcatgtgctgcttcttgcattcttccttttaatgttgtttgttttccatttctcaacgatgcactccgatatcacagtccaagttca |
351 |
Q |
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| T |
28922542 |
ttaataatggcattcatgtgctgcttcttgcattcttccttttaatgttgtttgttttccatttctcagtgatgcactccgatatcacagtctgatttca |
28922443 |
T |
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| Q |
352 |
atataatatatccttttaatattttattatgttcaagaggatcactttcacttatttataatctaattgtgata |
425 |
Q |
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| T |
28922442 |
atataatatatcc-tttaatattttattatgctcaagaggatcactttcacttatttataatctaattgtgata |
28922370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 14 - 410
Target Start/End: Complemental strand, 28913337 - 28912924
Alignment:
| Q |
14 |
actccacacatgatggttttacccaatgtccggataagagagcagatgttgtaggtctgtgaggctt------ctctactctctcttc----atatatct |
103 |
Q |
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| T |
28913337 |
actccacacataatggttttgctctatgtctggataagagaacagatgttgtaggtctgtcaggatttcctatctatactccctcttctttcatatatct |
28913238 |
T |
|
| Q |
104 |
attatgtgcttcaactacatccattttttaacaatctgtatataggatt---------gcatctgtcattttctttcacattgtcatgctgtgatttgtc |
194 |
Q |
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| T |
28913237 |
attgtgtgctttagctacttcgagtttttaacattctgtaaataagattcttgatatcgcatctatacttttctt-cacattgtcatgctgtgatttgtc |
28913139 |
T |
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| Q |
195 |
attgaattaagattctgtctacagtgacgacttagaagccaaacatactggctggtgttaataatggcattcatgtgctgcttcttgcattcttcctttt |
294 |
Q |
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| T |
28913138 |
attgcattgagattctctttacagtgacgacttagaagccaaatatattggctggtgttaataaccccattgatgtgttgcttcttgctttcttcctttt |
28913039 |
T |
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| Q |
295 |
aatgttgtttgttttccatttctcaacgatgcactccgatatcacagtccaagttcaatataatatatccttttaatattttattatgttcaagaggatc |
394 |
Q |
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| T |
28913038 |
aatgttgttt-atttccatttcctaccgatgtactccgatatcacagtccgagttcaatataatatatcctttaatgtttttattattttcaagaggatc |
28912940 |
T |
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| Q |
395 |
actttcacttatttat |
410 |
Q |
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| T |
28912939 |
actttcacttatttat |
28912924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 7 - 112
Target Start/End: Complemental strand, 28922745 - 28922640
Alignment:
| Q |
7 |
acttgtgactccacacatgatggttttacccaatgtccggataagagagcagatgttgtaggtctgtgaggcttctctactctctcttcatatatctatt |
106 |
Q |
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| T |
28922745 |
acttgtgactccacacatgatggttttacccaatgtccggataagagagcagatgttgtaggtctgtgaggcttctctactctctcttcatatatctatt |
28922646 |
T |
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| Q |
107 |
atgtgc |
112 |
Q |
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| T |
28922645 |
atgtgc |
28922640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 14 - 152
Target Start/End: Complemental strand, 28898991 - 28898848
Alignment:
| Q |
14 |
actccacacatgatggttttacccaatgtccggataagagagcagatgttgtaggtctgtgaggct------tctctactctctcttcatatatctatta |
107 |
Q |
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| T |
28898991 |
actccacacatgatggtttttcccaatgtctggataagagagcagatgttgtaggtctgtgaggctttcctatccatactctctcttcatatatctattt |
28898892 |
T |
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| Q |
108 |
tgtgcttcaactacatccattttttaacaatctgtatataggatt |
152 |
Q |
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| T |
28898891 |
tgtgcttaaactagct-taatttttaacaatctgtatataggatt |
28898848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 14 - 80
Target Start/End: Complemental strand, 28889025 - 28888959
Alignment:
| Q |
14 |
actccacacatgatggttttacccaatgtccggataagagagcagatgttgtaggtctgtgaggctt |
80 |
Q |
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| T |
28889025 |
actccacacatgatggttttgctcaatgtctggataagagaacagatgttttaggtctgtcaggctt |
28888959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 175 - 215
Target Start/End: Complemental strand, 28888845 - 28888805
Alignment:
| Q |
175 |
ttgtcatgctgtgatttgtcattgaattaagattctgtcta |
215 |
Q |
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| T |
28888845 |
ttgtcatgctgtgatttgtcattgcattgagattctttcta |
28888805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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