View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0938-Insertion-11 (Length: 345)

Name: NF0938-Insertion-11
Description: NF0938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0938-Insertion-11
NF0938-Insertion-11
[»] chr4 (6 HSPs)
chr4 (7-220)||(4456453-4456666)
chr4 (7-145)||(55150504-55150637)
chr4 (7-123)||(13773838-13773954)
chr4 (28-137)||(29827601-29827711)
chr4 (7-55)||(19192592-19192640)
chr4 (130-220)||(13776636-13776726)
[»] chr7 (1 HSPs)
chr7 (7-200)||(2941314-2941507)
[»] scaffold0445 (1 HSPs)
scaffold0445 (7-220)||(10663-10876)
[»] chr8 (2 HSPs)
chr8 (7-133)||(29209888-29210013)
chr8 (4-60)||(21237323-21237379)
[»] chr5 (1 HSPs)
chr5 (7-89)||(7881887-7881969)
[»] chr6 (1 HSPs)
chr6 (5-69)||(17344766-17344830)


Alignment Details
Target: chr4 (Bit Score: 170; Significance: 3e-91; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 7 - 220
Target Start/End: Original strand, 4456453 - 4456666
Alignment:
Q  7 aaatgcaagtttgcatgtgtatgcatctgtgttactagaaatcttggatgtcttacaacatgagattgtaaatttagttcatattttgaagaagcaaaat 106  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| ||||||| |||||||||| |||||||||||| ||||||||||    
T  4456453 aaatgcaagtttgcatgtgtatgcatcggtgttattagaaatcttggatgtcttacatcatgagactgtaaatttaattcatattttgaggaagcaaaat 4456552  T
Q  107 atttgtgctgactttatagctaaggaggctttttattccacctattcagttcagtggactcgtcctctaactagcttaaagtctctccttctaaaagaca 206  Q
    |||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||    
T  4456553 atttgtgctgactttataactaaggaggctttttattccgcctattcagttaagtggactggtcctctaactaacttaaagtctctccttctaaaagaca 4456652  T
Q  207 gcctagctagttag 220  Q
    ||||||||||||||    
T  4456653 gcctagctagttag 4456666  T

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Target: chr4; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 7 - 145
Target Start/End: Original strand, 55150504 - 55150637
Alignment:
Q  7 aaatgcaagtttgcatgtgtatgcatctgtgttactagaaatcttggatgtcttacaacatgagattgtaaatttagttcatattttgaagaagcaaaat 106  Q
    |||||||||||||||||||||||||| |||||||||||||||||  |||| |||||| ||| |     ||||||||||||||||||||| | |||| ||     
T  55150504 aaatgcaagtttgcatgtgtatgcatttgtgttactagaaatctcagatgccttacatcatta-----taaatttagttcatattttgagggagcagaac 55150598  T
Q  107 atttgtgctgactttatagctaaggaggctttttattcc 145  Q
    ||||||||||||||||| ||||||||||||| |||||||    
T  55150599 atttgtgctgactttatggctaaggaggcttcttattcc 55150637  T

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Target: chr4; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 7 - 123
Target Start/End: Original strand, 13773838 - 13773954
Alignment:
Q  7 aaatgcaagtttgcatgtgtatgcatctgtgttactagaaatcttggatgtcttacaacatgagattgtaaatttagttcatattttgaagaagcaaaat 106  Q
    ||||||||||||||||||||||| ||||||||||||| ||||||  |||||||| || |||  || ||||||||||||||||||||||| | ||| |||     
T  13773838 aaatgcaagtttgcatgtgtatgtatctgtgttactaaaaatctaagatgtcttgcatcattggactgtaaatttagttcatattttgagggagcgaaac 13773937  T
Q  107 atttgtgctgactttat 123  Q
    ||||||||||| |||||    
T  13773938 atttgtgctgattttat 13773954  T

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Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 137
Target Start/End: Original strand, 29827601 - 29827711
Alignment:
Q  28 tgcatctgtgttactagaaatcttggatgtcttacaacatgagattgtaaatttagttcatattttgaagaagcaaaatatttgtgctgac-tttatagc 126  Q
    ||||||||||||| ||||||||| | |||  ||||| | ||||| ||||||||||||||||||||| | | | ||||| |||||||||||| |||||  |    
T  29827601 tgcatctgtgttattagaaatctcgaatgcattacatcgtgagactgtaaatttagttcatattttaagggaacaaaacatttgtgctgacttttatgac 29827700  T
Q  127 taaggaggctt 137  Q
    |||||||||||    
T  29827701 taaggaggctt 29827711  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 19192640 - 19192592
Alignment:
Q  7 aaatgcaagtttgcatgtgtatgcatctgtgttactagaaatcttggat 55  Q
    |||||||||||||||||||||||| ||| | ||||||||||||| ||||    
T  19192640 aaatgcaagtttgcatgtgtatgcctctatcttactagaaatctcggat 19192592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 220
Target Start/End: Original strand, 13776636 - 13776726
Alignment:
Q  130 ggaggctttttattccacctattcagttcagtggactcgtcctctaactagcttaaagtctctccttctaaaagacagcctagctagttag 220  Q
    ||||||||  |||||| |||  |||||||| |||| |||||||||| || ||||| |||||||| || ||| |||||  ||||||||||||    
T  13776636 ggaggcttcctattccgcctgctcagttcactggattcgtcctctagctggcttagagtctctcattataagagacaatctagctagttag 13776726  T

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Target: chr7 (Bit Score: 94; Significance: 8e-46; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 7 - 200
Target Start/End: Complemental strand, 2941507 - 2941314
Alignment:
Q  7 aaatgcaagtttgcatgtgtatgcatctgtgttactagaaatcttggatgtcttacaacatgagattgtaaatttagttcatattttgaagaagcaaaat 106  Q
    |||||||||||| ||||||||||||| || |||||||||||||| ||||| |||||| ||||||| ||||||||||||||||||||||| | |||| ||     
T  2941507 aaatgcaagttttcatgtgtatgcatttgcgttactagaaatctcggatgccttacatcatgagactgtaaatttagttcatattttgagggagcagaac 2941408  T
Q  107 atttgtgctgactttatagctaaggaggctttttattccacctattcagttcagtggactcgtcctctaactagcttaaagtctctccttctaa 200  Q
    ||||||||||| ||||| ||||| |||||||  |||||| |||  |||| ||| ||||||||||||| | || ||||| |||||||||||||||    
T  2941407 atttgtgctgattttatggctaaagaggcttcctattccgcctgctcagctcaatggactcgtcctccagctggcttagagtctctccttctaa 2941314  T

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Target: scaffold0445 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 7 - 220
Target Start/End: Complemental strand, 10876 - 10663
Alignment:
Q  7 aaatgcaagtttgcatgtgtatgcatctgtgttactagaaatcttggatgtcttacaacatgagattgtaaatttagttcatattttgaagaagcaaaat 106  Q
    |||||||||||||||||||||||||| ||||||||||||||| | ||||| ||||||  ||| || | ||||||||||| ||||||||| | |||| ||     
T  10876 aaatgcaagtttgcatgtgtatgcatatgtgttactagaaatatcggatgccttacataatgggactataaatttagttaatattttgagggagcagaac 10777  T
Q  107 atttgtgctgactttatagctaaggaggctttttattccacctattcagttcagtggactcgtcctctaactagcttaaagtctctccttctaaaagaca 206  Q
    |||  || || ||| || ||||| |||| ||  |||||  |||  |||  ||| |||||| ||||||   ||  |||| ||||||||||||||| |||||    
T  10776 attaatgttgccttcatggctaaagaggtttcctattctgcctgctcaactcattggacttgtcctcctgctgacttagagtctctccttctaagagaca 10677  T
Q  207 gcctagctagttag 220  Q
      ||||||||||||    
T  10676 atctagctagttag 10663  T

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Target: chr8 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 7 - 133
Target Start/End: Original strand, 29209888 - 29210013
Alignment:
Q  7 aaatgcaagtttgcatgtgtatgcatctgtgttactagaaatcttggatgtcttacaacatgagattgtaaatttagttcatattttgaagaagcaaaat 106  Q
    |||||||||||||||| |  |||| | |||| |||||||||||| ||||| ||| || |||| || |||||||| |||||||||| ||| | |||| ||     
T  29209888 aaatgcaagtttgcattttcatgcttatgtgctactagaaatctcggatgccttgcatcatg-gactgtaaattcagttcatattatgagggagcagaac 29209986  T
Q  107 atttgtgctgactttatagctaaggag 133  Q
    ||||||||||||||||| |||||||||    
T  29209987 atttgtgctgactttatggctaaggag 29210013  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 21237323 - 21237379
Alignment:
Q  4 aacaaatgcaagtttgcatgtgtatgcatctgtgttactagaaatcttggatgtctt 60  Q
    |||||||| |||||||||||||||||  |||||||| ||||||||||  ||||||||    
T  21237323 aacaaatgtaagtttgcatgtgtatgtctctgtgttgctagaaatctcagatgtctt 21237379  T

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Target: chr5 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 7 - 89
Target Start/End: Complemental strand, 7881969 - 7881887
Alignment:
Q  7 aaatgcaagtttgcatgtgtatgcatctgtgttactagaaatcttggatgtcttacaacatgagattgtaaatttagttcata 89  Q
    |||| ||||||| ||||| ||||| ||||||||||||||||||| ||||| ||| || ||||||| |||||||||||||||||    
T  7881969 aaatacaagtttacatgtatatgcctctgtgttactagaaatctcggatgccttgcatcatgagactgtaaatttagttcata 7881887  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 69
Target Start/End: Original strand, 17344766 - 17344830
Alignment:
Q  5 acaaatgcaagtttgcatgtgtatgcatctgtgttactagaaatcttggatgtcttacaacatga 69  Q
    ||||||| |||||||||  ||||||||||| |||||||||||||||  |||| ||| ||||||||    
T  17344766 acaaatgtaagtttgcaaatgtatgcatctatgttactagaaatctcagatgccttgcaacatga 17344830  T

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