View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0938-Insertion-12 (Length: 335)

Name: NF0938-Insertion-12
Description: NF0938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0938-Insertion-12
NF0938-Insertion-12
[»] chr5 (1 HSPs)
chr5 (8-287)||(40328640-40328916)


Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 8 - 287
Target Start/End: Original strand, 40328640 - 40328916
Alignment:
Q  8 aaatgttacttctataattttttattatggtcattattatccaaaattaagtaacaaaccaaagatctttcaatctccagtnnnnnnnnnngaaacatgc 107  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||          |||||||||    
T  40328640 aaatattactgctataattttttattatggtcattattatccaaaactaagtaacaaaccaaagatctttcaatctccagtaaaaaaa---gaaacatgc 40328736  T
Q  108 ttatcttctccaaagtcacgactaataaaaccaccacgtctccattgccacctacacggagagaatcactctactacatgacttgggtcctcgctcgtcg 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  40328737 ttatcttctccaaagtcacgactaataaaaccaccacgtctccattgccacctacacagagagaatcactctactacatgacttgggtcctcgctcgtcg 40328836  T
Q  208 tcactctagttggcttggcgggaatcactttaattgagaaccaaagagttgctttagatcatacccattttcactttctg 287  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  40328837 tcactctagttggcttggcgggaatcactttaattgagaaccaaagagttgctttagatcatacctattttcactttctg 40328916  T

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