View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0938-Insertion-13 (Length: 325)
Name: NF0938-Insertion-13
Description: NF0938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0938-Insertion-13 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 6 - 325
Target Start/End: Complemental strand, 10783217 - 10782898
Alignment:
| Q |
6 |
cacgtatgccagcatatgcaatggtagacgccagggaaatccnnnnnnnggaagggccttcatggaaagtgagaaaagaagaggtaaatctatgttgttt |
105 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10783217 |
cacgtatgccagcagatgcaatggtagacgccagggaaatccaagaaaaggaagggccttcatggaaagtgagaaaagaagaggtaaatctatgttgttt |
10783118 |
T |
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| Q |
106 |
tcattctaaaaatattttaattgatgtgttttgaaaatatttttaagcattcaatagtagatacacattttttgtatatcttgcactaacggaatttatt |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
10783117 |
tcattctaaaaatattttaattgatgtgttttgaaaatatttttaagcattcaatagtagatacccattttttgtatatcttgcactaacggaatttatt |
10783018 |
T |
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| Q |
206 |
aaattcattatttgatgtcaaattgtactccaagaagttatggttaaattgtgtcacaaaatcaatatttagtttgtgttatgggatgcaaatgcaatga |
305 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10783017 |
aaattcattatttgatgtcaaactgtactccaagaagttatggttaaattgtgtcacaaaatcaatatttagtttgtgttatgggatgcaaatgcaatga |
10782918 |
T |
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| Q |
306 |
gttggtttctatatggccaa |
325 |
Q |
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||||||||||||||| |||| |
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| T |
10782917 |
gttggtttctatatgtccaa |
10782898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 55 - 119
Target Start/End: Complemental strand, 10782692 - 10782628
Alignment:
| Q |
55 |
ggaagggccttcatggaaagtgagaaaagaagaggtaaatctatgttgttttcattctaaaaata |
119 |
Q |
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| T |
10782692 |
ggaagggccttcacctacagtgaaaaaagaagaggtaaatctattttgtttttattctaaaaata |
10782628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 163; Significance: 5e-87; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 6 - 252
Target Start/End: Complemental strand, 23438956 - 23438705
Alignment:
| Q |
6 |
cacgtatgccagcatatgcaatggtagacgccagggaaatccnnnnnnnggaagggccttcatggaaagtgagaaaagaagaggtaaatctatgttgttt |
105 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |||||| |
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| T |
23438956 |
cacgtatgccagcagatgcaatggtagacgccagggaaatccaagaaatggaagggcctgcatggaaagtgagaaaagaagaggtaaatctattttgttt |
23438857 |
T |
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| Q |
106 |
tcattctaaaaatattttaattgatgtgttttgaaaatatttttaagcattcaatagtagatacacattttttgtatatcttgcactaacggaatttatt |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||| |
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| T |
23438856 |
tcattctaaaaatattttaattgatgtgttttgaaaatatttttaagcattcattagtagatatacattttttgtatatcttgcactaacggaattgatt |
23438757 |
T |
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| Q |
206 |
aaatt-----cattatttgatgtcaaattgtactccaagaagttatggttaa |
252 |
Q |
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| T |
23438756 |
acattagaagcaatatttgatatcaaattgtattccaagaagtcattgttaa |
23438705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 6 - 239
Target Start/End: Original strand, 23438427 - 23438665
Alignment:
| Q |
6 |
cacgtatgccagcatatgcaatggtagacgccagggaaatccnnnnnnnggaagggccttcatggaaagtgagaaaagaagaggtaaatctatgttgttt |
105 |
Q |
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||||||||||| || ||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||| || |
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| T |
23438427 |
cacgtatgccaccagatgcagtggtagacgccagggaaatccaagaaatggaacggccttcatggaaagtgagaaaagaagaggtaaatctattttgctt |
23438526 |
T |
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| Q |
106 |
tcattctaaaaatattttaattgatgtgttttgaaaatatttttaagcattcaatagtagatacacattttttgtatatcttgcactaacggaatttatt |
205 |
Q |
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||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |
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| T |
23438527 |
tcattataaaaatattttaattgatgtctttggaaaatatttttaagcattcaatagtagatacacattttttgtatatcttgcgctaacggaattgatt |
23438626 |
T |
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| Q |
206 |
aaatt-----cattatttgatgtcaaattgtactccaag |
239 |
Q |
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| T |
23438627 |
acattagaagcaatatttgatatcaaattgtattccaag |
23438665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 10 - 231
Target Start/End: Original strand, 8673939 - 8674160
Alignment:
| Q |
10 |
tatgccagcatatgcaatggtagacgccagggaaatccnnnnnnnggaagggccttcatggaaagtgagaaaagaagaggtaaatctatgttgttttcat |
109 |
Q |
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|||||||||| |||||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||| | |
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| T |
8673939 |
tatgccagcagatgcaatggtagacgctagggaaatccaagaaatggaagggccttcatagaaagtgagaaaagaagaggtaaatctattttgttttcgt |
8674038 |
T |
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| Q |
110 |
tctaaaaatattttaattgatgtgttttgaaaatatttttaagcattcaatagtagatacacattttttgtatatcttgcactaacggaatttattaaat |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |||| || |
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| T |
8674039 |
tctaaaaatattttaattgatgtgttttgaaaatatttttaagcattcaatagtagatacacattttttatatatcttgtgctaacggaattgattacat |
8674138 |
T |
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| Q |
210 |
tcattatttgatgtcaaattgt |
231 |
Q |
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||| |||||||| | ||||||| |
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| T |
8674139 |
tcaatatttgatattaaattgt |
8674160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 5 - 172
Target Start/End: Complemental strand, 8674322 - 8674158
Alignment:
| Q |
5 |
acacgtatgccagcatatgcaatggtagacgccagggaaatccnnnnnnnggaagggccttcatggaaagtgagaaaagaagaggtaaatctatgttgtt |
104 |
Q |
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||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
8674322 |
acacgtatgccagcagatgcaatggtagacaccagggaaatcaaagaaatggaagggccttcatggaaagtgagaaaagaagaggtaaatctattttgtt |
8674223 |
T |
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| Q |
105 |
ttcattctaaaaatattttaattga--tgtgttttgaaaatatttttaagcattcaatagtagatacaca |
172 |
Q |
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| T |
8674222 |
ttcattctagaaatagttt-attgatgtgtgttttgaaaata----taagcattcaatagtagatacaca |
8674158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 89; Significance: 7e-43; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 6 - 127
Target Start/End: Original strand, 50508229 - 50508350
Alignment:
| Q |
6 |
cacgtatgccagcatatgcaatggtagacgccagggaaatccnnnnnnnggaagggccttcatggaaagtgagaaaagaagaggtaaatctatgttgttt |
105 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||| |
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| T |
50508229 |
cacgtatgccagcagatgcaatggtagacgccagggaaatccaagaaatggaagggccttcatggaaagtgagaaaagatgaggtaaatctattttgttt |
50508328 |
T |
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| Q |
106 |
tcattctaaaaatattttaatt |
127 |
Q |
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|||||||||||||||||||||| |
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| T |
50508329 |
tcattctaaaaatattttaatt |
50508350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 259 - 325
Target Start/End: Original strand, 50508870 - 50508936
Alignment:
| Q |
259 |
tcacaaaatcaatatttagtttgtgttatgggatgcaaatgcaatgagttggtttctatatggccaa |
325 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |
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| T |
50508870 |
tcacaaaatcaatatttagtttgtgttatgggatgcaaatgcaatgagttggtttgtatatgtccaa |
50508936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 73 - 151
Target Start/End: Original strand, 50509167 - 50509248
Alignment:
| Q |
73 |
agtgagaaaagaagaggtaaatctatgttgttttcattctaaaaatattttaattgat---gtgttttgaaaatatttttaa |
151 |
Q |
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||||| |||||||||||||||||||| ||||||| |||||||||||| || |||| || || |||||||||| ||||||| |
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| T |
50509167 |
agtgaaaaaagaagaggtaaatctattttgtttttattctaaaaataattcaattcatatagtattttgaaaatgtttttaa |
50509248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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