View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0938-Insertion-14 (Length: 240)
Name: NF0938-Insertion-14
Description: NF0938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0938-Insertion-14 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 8 - 240
Target Start/End: Original strand, 49352477 - 49352709
Alignment:
| Q |
8 |
ctaagaacattagggagttctctattcttaaaatttgatgttgaagagtggaagtttatcagagacagtgagatttggaatttaccacaaaaagaagatg |
107 |
Q |
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| T |
49352477 |
ctaagaacattagggagttctctattcttaaaatttgatgttgaagagtggaagtttatcagagacagtgagatttggaatttaccacaaaaagaagatg |
49352576 |
T |
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| Q |
108 |
acattttgcctggtctcaaattaagttatgatcagttaccttcttatttaaaacaatgttttgcttgcttctctctctttgaaaagaactttgatttttc |
207 |
Q |
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| T |
49352577 |
acattttgcctggtctcaaattaagttatgatcagttaccttcttatttaaaacaatgttttgcttgcttctctctctttgaaaagaactttgatttttc |
49352676 |
T |
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| Q |
208 |
taattttcatgttagtgtgctatgggtagcact |
240 |
Q |
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| T |
49352677 |
taattttcatgttagtgtgctatgggtggcact |
49352709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 8 - 234
Target Start/End: Original strand, 49341101 - 49341325
Alignment:
| Q |
8 |
ctaagaacattagggagttctctattcttaaaatttgatgttgaagagtggaagtttatcagagacagtgagatttggaatttaccacaaaaagaagatg |
107 |
Q |
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||||||||||| ||||||||||||||||||||| |||| | |||||||||||||||| ||| |||||||| |||||| |||||||||||||||| || | |
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| T |
49341101 |
ctaagaacattggggagttctctattcttaaaagatgatatagaagagtggaagtttaacagggacagtgaaatttgggatttaccacaaaaagatgacg |
49341200 |
T |
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| Q |
108 |
acattttgcctggtctcaaattaagttatgatcagttaccttcttatttaaaacaatgttttgcttgcttctctctctttgaaaagaactttgatttttc |
207 |
Q |
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| T |
49341201 |
acattttgtctgctatcaaa--aagttatgatcagttaccttcttatttaaaacaatgttttgcttgcttctctctctttgaaaagtactttccatttat |
49341298 |
T |
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| Q |
208 |
taattttcatgttagtgtgctatgggt |
234 |
Q |
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| T |
49341299 |
taattttgatgttagtgtgctatgggt |
49341325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 8 - 199
Target Start/End: Complemental strand, 32783792 - 32783601
Alignment:
| Q |
8 |
ctaagaacattagggagttctctattcttaaaatttgatgttgaagagtggaagtttatcagagacagtgagatttggaatttaccacaaaaagaagatg |
107 |
Q |
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|||||||||| ||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |
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| T |
32783792 |
ctaagaacatcggggagttctctattcctaaaagttgatgtggaagagtggaagtttatcagagacagtgaaatttggaatttacctcaaaaagaagatg |
32783693 |
T |
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| Q |
108 |
acattttgcctggtctcaaattaagttatgatcagttaccttcttatttaaaacaatgttttgcttgcttctctctctttgaaaagaacttt |
199 |
Q |
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| T |
32783692 |
acattttgcctgctatcaaattaagttacgatcagttaccttcttatttaaaacgatgttttacttgcttctccctctttcaaaaggacttt |
32783601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 101; Significance: 3e-50; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 8 - 188
Target Start/End: Original strand, 29750869 - 29751049
Alignment:
| Q |
8 |
ctaagaacattagggagttctctattcttaaaatttgatgttgaagagtggaagtttatcagagacagtgagatttggaatttaccacaaaaagaagatg |
107 |
Q |
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||||||||||| |||||||| | ||||||||| |||| ||||||||||||||||| | || |||| |||||||||||||||||||||||||||||||| |
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| T |
29750869 |
ctaagaacattggggagttcattgttcttaaaagatgatattgaagagtggaagtttgttagggacaatgagatttggaatttaccacaaaaagaagatg |
29750968 |
T |
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| Q |
108 |
acattttgcctggtctcaaattaagttatgatcagttaccttcttatttaaaacaatgttttgcttgcttctctctctttg |
188 |
Q |
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| T |
29750969 |
atattttgcctgctctcaaattaagttttgatcaattaccctcatatttaaaacgatgttttgcctgcttctccctctttg |
29751049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 8 - 192
Target Start/End: Complemental strand, 29602425 - 29602241
Alignment:
| Q |
8 |
ctaagaacattagggagttctctattcttaaaatttgatgttgaagagtggaagtttatcagagacagtgagatttggaatttaccacaaaaagaagatg |
107 |
Q |
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||||||||||| ||||||| | ||||||||| |||| | ||||||||||||||| | || |||| |||||||||||||||||||||||||||||||| |
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| T |
29602425 |
ctaagaacattggggagtttattgttcttaaaagatgatatagaagagtggaagtttgttagggacaatgagatttggaatttaccacaaaaagaagatg |
29602326 |
T |
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| Q |
108 |
acattttgcctggtctcaaattaagttatgatcagttaccttcttatttaaaacaatgttttgcttgcttctctctctttgaaaa |
192 |
Q |
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| T |
29602325 |
atattttgcctgctatcaaattaagttttgatcaattaccatcttatttaaaacgatgttttgcctgcttctccctcttcgaaaa |
29602241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 43 - 188
Target Start/End: Original strand, 29743871 - 29744016
Alignment:
| Q |
43 |
tgatgttgaagagtggaagtttatcagagacagtgagatttggaatttaccacaaaaagaagatgacattttgcctggtctcaaattaagttatgatcag |
142 |
Q |
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|||| ||||||||||||||||| | || |||| ||||||||||||||||||||||||| ||||||| |||||||||| | |||||||||||| |||||| |
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| T |
29743871 |
tgatattgaagagtggaagtttgttagggacaatgagatttggaatttaccacaaaaaaaagatgatattttgcctgctatcaaattaagttttgatcaa |
29743970 |
T |
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| Q |
143 |
ttaccttcttatttaaaacaatgttttgcttgcttctctctctttg |
188 |
Q |
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| T |
29743971 |
ttaccgtcttatttgaaacgatgttttgcctgcttctccctctttg |
29744016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 8 - 192
Target Start/End: Original strand, 35157987 - 35158171
Alignment:
| Q |
8 |
ctaagaacattagggagttctctattcttaaaatttgatgttgaagagtggaagtttatcagagacagtgagatttggaatttaccacaaaaagaagatg |
107 |
Q |
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||||| ||||| |||||||| || ||||||||| ||||| | |||||||||||||| | || |||| |||||||||||||||||| |||||||| || | |
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| T |
35157987 |
ctaaggacattggggagttcgctgttcttaaaagttgatatacaagagtggaagtttgttagggacaatgagatttggaatttaccgcaaaaagacgagg |
35158086 |
T |
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| Q |
108 |
acattttgcctggtctcaaattaagttatgatcagttaccttcttatttaaaacaatgttttgcttgcttctctctctttgaaaa |
192 |
Q |
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| T |
35158087 |
acattttaccagcaatcaaattaagttatgatcaattaccttcttatttaaaacagtgttttgcttgcttctccctctttgaaaa |
35158171 |
T |
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