View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0938-Insertion-15 (Length: 176)
Name: NF0938-Insertion-15
Description: NF0938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0938-Insertion-15 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 8 - 176
Target Start/End: Complemental strand, 1540098 - 1539930
Alignment:
| Q |
8 |
gtttcaaatgacagtaccataaccaaaccatcaggggcatgctgttctggcttgaaaactgttctgaaaacatctcctacttgtctttgtgattctctca |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1540098 |
gtttcaaatgacagtaccataaccaaaccatcaggggcatgctgttctggcttgaaaactgttctgaaaacatctcctacttgtctttgtgattctctca |
1539999 |
T |
|
| Q |
108 |
aaaacagtgctaatcttggtgttgttttgaatgttacaaaagctgccactcttcctgctgcttgtggtc |
176 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
1539998 |
aaaacagtgctaatcttggtgttgttttgaatgttacaaaagctgccacccttcctgctgcttgtggtc |
1539930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 47 - 168
Target Start/End: Complemental strand, 29804130 - 29804009
Alignment:
| Q |
47 |
tgctgttctggcttgaaaactgttctgaaaacatctcctacttgtctttgtgattctctcaaaaacagtgctaatcttggtgttgttttgaatgttacaa |
146 |
Q |
| |
|
||||||||||| |||||| |||| || ||||| ||||| ||||||| ||||| || |||| | |||||| | |||||||||| ||||||||||| | |
|
|
| T |
29804130 |
tgctgttctggtttgaaatctgtgctcaaaactgctccttcttgtctctgtgaggctttcaagagtagtgctcagtttggtgttgtcttgaatgttacca |
29804031 |
T |
|
| Q |
147 |
aagctgccactcttcctgctgc |
168 |
Q |
| |
|
||||| | ||||||||||||| |
|
|
| T |
29804030 |
aagctacttctcttcctgctgc |
29804009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University