View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0938-Insertion-4 (Length: 940)

Name: NF0938-Insertion-4
Description: NF0938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0938-Insertion-4
NF0938-Insertion-4
[»] chr8 (40 HSPs)
chr8 (8-449)||(20139096-20139539)
chr8 (488-794)||(20138759-20139064)
chr8 (695-791)||(22773957-22774053)
chr8 (695-794)||(31207011-31207110)
chr8 (695-794)||(12897925-12898024)
chr8 (695-794)||(32065934-32066032)
chr8 (702-794)||(16457131-16457223)
chr8 (702-794)||(24995051-24995143)
chr8 (702-790)||(35815900-35815988)
chr8 (702-793)||(3584071-3584163)
chr8 (702-794)||(9519839-9519931)
chr8 (696-792)||(35821590-35821685)
chr8 (702-794)||(37986511-37986603)
chr8 (695-794)||(36631156-36631254)
chr8 (702-793)||(15821033-15821123)
chr8 (856-922)||(20138630-20138696)
chr8 (702-788)||(13538324-13538410)
chr8 (702-788)||(13686064-13686150)
chr8 (861-922)||(9519703-9519764)
chr8 (726-794)||(27889179-27889247)
chr8 (726-794)||(27947837-27947905)
chr8 (857-920)||(16457288-16457351)
chr8 (857-920)||(41893215-41893278)
chr8 (857-922)||(24995207-24995272)
chr8 (858-922)||(31207176-31207240)
chr8 (695-755)||(9659474-9659534)
chr8 (857-922)||(22773818-22773883)
chr8 (858-922)||(34388821-34388884)
chr8 (857-921)||(37986671-37986735)
chr8 (868-921)||(32066119-32066172)
chr8 (702-782)||(38577442-38577522)
chr8 (867-922)||(12898098-12898153)
chr8 (727-793)||(10837918-10837984)
chr8 (861-911)||(36631038-36631088)
chr8 (753-794)||(41893112-41893153)
chr8 (750-794)||(34388711-34388755)
chr8 (857-920)||(35821445-35821508)
chr8 (695-735)||(34866309-34866349)
chr8 (861-917)||(38577606-38577662)
chr8 (864-919)||(35816066-35816121)
[»] chr7 (38 HSPs)
chr7 (8-449)||(44352531-44352975)
chr7 (488-794)||(44353007-44353312)
chr7 (695-794)||(31971784-31971883)
chr7 (695-794)||(5859932-5860031)
chr7 (695-794)||(10244513-10244612)
chr7 (702-793)||(6585220-6585311)
chr7 (695-794)||(47325534-47325633)
chr7 (695-794)||(33434480-33434579)
chr7 (702-794)||(3419055-3419145)
chr7 (702-794)||(42454390-42454482)
chr7 (697-792)||(11378772-11378866)
chr7 (702-793)||(34391516-34391607)
chr7 (709-794)||(3419321-3419404)
chr7 (856-922)||(44353375-44353441)
chr7 (695-794)||(25161141-25161240)
chr7 (731-794)||(38306593-38306656)
chr7 (696-794)||(41089396-41089491)
chr7 (696-789)||(3867453-3867545)
chr7 (857-940)||(31971947-31972032)
chr7 (697-794)||(37795329-37795426)
chr7 (697-794)||(37795657-37795754)
chr7 (702-794)||(48161697-48161788)
chr7 (862-922)||(3867319-3867379)
chr7 (702-794)||(43482238-43482329)
chr7 (857-940)||(47325698-47325783)
chr7 (695-757)||(40726140-40726202)
chr7 (858-922)||(37795192-37795256)
chr7 (858-921)||(10244386-10244449)
chr7 (857-940)||(25160996-25161079)
chr7 (702-769)||(35745488-35745555)
chr7 (856-922)||(40726317-40726382)
chr7 (864-920)||(3419475-3419531)
chr7 (869-922)||(38306464-38306517)
chr7 (857-920)||(3419209-3419272)
chr7 (857-920)||(5860101-5860164)
chr7 (599-651)||(12141383-12141435)
chr7 (713-784)||(31225838-31225910)
chr7 (713-784)||(35401309-35401381)
[»] chr3 (40 HSPs)
chr3 (695-794)||(2392152-2392251)
chr3 (695-794)||(2393915-2394014)
chr3 (702-791)||(47236034-47236123)
chr3 (702-791)||(50305230-50305319)
chr3 (702-794)||(21343680-21343772)
chr3 (695-794)||(31483213-31483312)
chr3 (695-794)||(45164186-45164285)
chr3 (703-794)||(9583710-9583801)
chr3 (695-794)||(19176839-19176938)
chr3 (702-793)||(23328004-23328095)
chr3 (695-794)||(34475407-34475506)
chr3 (702-793)||(40023225-40023316)
chr3 (857-922)||(47235901-47235966)
chr3 (722-794)||(30352115-30352187)
chr3 (702-793)||(45399119-45399210)
chr3 (695-794)||(17551290-17551389)
chr3 (695-792)||(4463734-4463831)
chr3 (697-773)||(37158660-37158735)
chr3 (857-924)||(20611983-20612050)
chr3 (857-920)||(34475569-34475632)
chr3 (702-793)||(50559978-50560069)
chr3 (725-794)||(43012710-43012779)
chr3 (857-922)||(53248104-53248169)
chr3 (702-791)||(53248236-53248325)
chr3 (858-918)||(2392320-2392380)
chr3 (858-918)||(2394084-2394144)
chr3 (702-790)||(25506726-25506814)
chr3 (857-940)||(30352254-30352337)
chr3 (857-940)||(43012558-43012643)
chr3 (857-922)||(19176707-19176772)
chr3 (858-920)||(31483088-31483150)
chr3 (867-922)||(17551155-17551210)
chr3 (857-922)||(45164058-45164123)
chr3 (857-940)||(9583868-9583952)
chr3 (861-903)||(40023389-40023431)
chr3 (695-758)||(47439284-47439347)
chr3 (861-919)||(45399002-45399060)
chr3 (695-788)||(5556918-5557011)
chr3 (857-906)||(7105060-7105109)
chr3 (861-918)||(23328167-23328224)
[»] chr2 (29 HSPs)
chr2 (702-789)||(14436923-14437010)
chr2 (695-794)||(39338510-39338609)
chr2 (711-793)||(17116553-17116635)
chr2 (704-792)||(387511-387599)
chr2 (702-794)||(41877208-41877300)
chr2 (695-794)||(10524431-10524529)
chr2 (702-793)||(14106179-14106269)
chr2 (695-790)||(43816096-43816191)
chr2 (695-792)||(3745676-3745773)
chr2 (702-791)||(13512495-13512584)
chr2 (702-790)||(5254590-5254677)
chr2 (702-793)||(7874610-7874702)
chr2 (703-792)||(45311461-45311550)
chr2 (857-921)||(10524304-10524368)
chr2 (702-794)||(14405532-14405623)
chr2 (858-922)||(17116693-17116757)
chr2 (696-772)||(15457817-15457893)
chr2 (702-790)||(43248883-43248971)
chr2 (702-793)||(7461010-7461100)
chr2 (695-778)||(7455601-7455683)
chr2 (857-922)||(39338679-39338743)
chr2 (695-763)||(25280964-25281032)
chr2 (695-761)||(9823695-9823761)
chr2 (705-791)||(22888552-22888637)
chr2 (857-940)||(387357-387442)
chr2 (861-919)||(5254459-5254515)
chr2 (861-916)||(7874500-7874554)
chr2 (864-919)||(14106342-14106397)
chr2 (763-792)||(15457278-15457307)
[»] chr1 (28 HSPs)
chr1 (695-794)||(6804871-6804969)
chr1 (695-794)||(30685573-30685672)
chr1 (695-793)||(46814114-46814212)
chr1 (695-794)||(31584689-31584787)
chr1 (702-792)||(24449587-24449676)
chr1 (702-794)||(40216162-40216254)
chr1 (695-792)||(7002522-7002619)
chr1 (695-792)||(14320658-14320755)
chr1 (695-794)||(5389077-5389171)
chr1 (857-922)||(24449743-24449808)
chr1 (702-794)||(5459493-5459580)
chr1 (702-790)||(27031497-27031585)
chr1 (702-794)||(41920790-41920882)
chr1 (861-918)||(5459368-5459425)
chr1 (857-921)||(46692632-46692696)
chr1 (695-794)||(24684142-24684240)
chr1 (857-920)||(6804745-6804808)
chr1 (748-793)||(24659264-24659309)
chr1 (857-922)||(41920660-41920725)
chr1 (857-917)||(30685737-30685797)
chr1 (857-940)||(5389235-5389319)
chr1 (748-794)||(46692521-46692567)
chr1 (863-919)||(46814286-46814342)
chr1 (863-903)||(24684310-24684350)
chr1 (861-901)||(31584854-31584894)
chr1 (859-906)||(32882585-32882632)
chr1 (887-916)||(6764224-6764253)
chr1 (893-922)||(31585608-31585637)
[»] chr4 (27 HSPs)
chr4 (695-794)||(35329340-35329439)
chr4 (695-794)||(27555579-27555679)
chr4 (695-794)||(7703020-7703118)
chr4 (702-794)||(30964770-30964862)
chr4 (695-794)||(8705789-8705888)
chr4 (702-792)||(46698435-46698525)
chr4 (702-790)||(2826118-2826206)
chr4 (695-794)||(4306038-4306136)
chr4 (695-794)||(8255360-8255459)
chr4 (695-794)||(8268778-8268877)
chr4 (702-790)||(35341007-35341097)
chr4 (702-793)||(31050317-31050408)
chr4 (702-792)||(49528421-49528511)
chr4 (702-778)||(9750116-9750191)
chr4 (702-792)||(36689461-36689551)
chr4 (711-794)||(20464922-20465005)
chr4 (696-794)||(11281375-11281473)
chr4 (856-922)||(30167377-30167442)
chr4 (857-922)||(8255230-8255295)
chr4 (857-922)||(8268648-8268713)
chr4 (857-922)||(8705957-8706022)
chr4 (702-791)||(30167219-30167310)
chr4 (863-922)||(20464793-20464852)
chr4 (860-922)||(30964640-30964702)
chr4 (702-793)||(52868767-52868859)
chr4 (599-646)||(56040726-56040773)
chr4 (861-919)||(31050478-31050536)
[»] chr5 (16 HSPs)
chr5 (702-791)||(34378435-34378524)
chr5 (695-794)||(18593575-18593674)
chr5 (695-794)||(7452921-7453020)
chr5 (702-794)||(5656749-5656841)
chr5 (695-785)||(18313303-18313393)
chr5 (864-922)||(34378301-34378359)
chr5 (857-940)||(18593426-18593511)
chr5 (702-794)||(698700-698792)
chr5 (695-794)||(7161663-7161762)
chr5 (732-794)||(29087811-29087873)
chr5 (695-788)||(18255099-18255192)
chr5 (857-906)||(29087698-29087747)
chr5 (748-792)||(41250895-41250939)
chr5 (857-940)||(7161829-7161914)
chr5 (872-921)||(698565-698614)
chr5 (857-897)||(7451601-7451641)
[»] scaffold0172 (2 HSPs)
scaffold0172 (696-790)||(19255-19349)
scaffold0172 (862-922)||(19120-19177)
[»] chr6 (10 HSPs)
chr6 (695-794)||(3254290-3254389)
chr6 (695-794)||(15944332-15944431)
chr6 (702-794)||(3117827-3117919)
chr6 (695-794)||(10542164-10542262)
chr6 (738-792)||(33697789-33697843)
chr6 (702-779)||(15132496-15132573)
chr6 (857-921)||(10542036-10542100)
chr6 (858-922)||(14663280-14663344)
chr6 (857-920)||(3117698-3117761)
chr6 (702-768)||(14663414-14663478)
[»] scaffold0343 (2 HSPs)
scaffold0343 (702-794)||(6038-6130)
scaffold0343 (857-922)||(5909-5974)
[»] scaffold0434 (1 HSPs)
scaffold0434 (718-794)||(2345-2421)
[»] scaffold0085 (1 HSPs)
scaffold0085 (702-794)||(48668-48760)
[»] scaffold0068 (2 HSPs)
scaffold0068 (695-746)||(35473-35524)
scaffold0068 (857-940)||(35588-35670)


Alignment Details
Target: chr8 (Bit Score: 405; Significance: 0; HSPs: 40)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 8 - 449
Target Start/End: Complemental strand, 20139539 - 20139096
Alignment:
Q  8 tgatctgcaagtgaaagggaaaccttgatctagctcttgattagatgctaattaagaggataatgcatgtgaagttgatgggagggagagaaaagaagca 107  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20139539 tgatctgcaagtgaaagggaaaccttgatctagctcttgattaaatgctaattaagaggataatgcatgtgaagttgatgggagggagagaaaagaagca 20139440  T
Q  108 aagattaattttttgctacgcgcagaggagaggaatagagtaaagagaacgatgggacaaatgaaatgatcgagtagaaatagagaagagtttgcaggaa 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20139439 aagattaattttttgctacgcgcagaggagaggaatagagtaaagagaacgatgggacaaatgaaatgatcgagtagaaatagagaagagtttgcaggaa 20139340  T
Q  208 aaaaggctatagagaagagggtggtacaatgtccttttgaaagagacggtgagggtgtggttattaacttgtgttgtgagtcaaaatagatttgaattca 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  20139339 aaaaggctatagagaagagggtggtacaatgtccttttgaaagagacggtgagggtgtgtttattaacttgtgttgtgagtcaaaatagatttgaattca 20139240  T
Q  308 atatataaagatcatacaaaatgtcaatagaatttaatgtgtatctatctattttaggtttacactaatattttagagtgtaaattctcacaaaaagtat 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |    
T  20139239 atatataaagatcatacaaaatgtcaatagaatttaatgtgtatctatctattttaggtttacactattatcttagagtgtaaattctcacaaaaagttt 20139140  T
Q  408 tttttttct--ctcaactttctccctctccaacaatccaacctt 449  Q
    ||||||| |  |||||||||||||||||||||||||| ||||||    
T  20139139 ttttttttttcctcaactttctccctctccaacaatctaacctt 20139096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 488 - 794
Target Start/End: Complemental strand, 20139064 - 20138759
Alignment:
Q  488 attattgaaaatagtttatggtcaattttgagatgaaatcacccatcttcgtgtttttcttcttattttaacctaaacaaattattttcacataaatcta 587  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20139064 attattgaaaatagtttatgatcaattttgagatgaaatcacccatcttcgtgtttttcttcttattttaacctaaacaaattattttcacataaatcta 20138965  T
Q  588 gcnnnnnnncatgatttcgtcgtttaagttcggagttttgttgtttgtcgtcttctgcgacattatttgatttttcgccaaattgtagagttcattcaan 687  Q
    ||       |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||     
T  20138964 gc-ttttttcatgatttcgtcgtttaagttcagagttttgttgtttgttgtcttctgcgacattatttgatttttcgtcaaattgtagagttcattcaat 20138866  T
Q  688 nnnnnnnaatcggtaaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccata 787  Q
           ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |||||||||||    
T  20138865 tttttttaatcggtaaatattattaaacgccatccccgcaagacgcaaagtatggacgaaacaagatacaaatggtgccgcatatagatggtacaccata 20138766  T
Q  788 accacct 794  Q
    |||||||    
T  20138765 accacct 20138759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 695 - 791
Target Start/End: Complemental strand, 22774053 - 22773957
Alignment:
Q  695 aatcggtaaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataacca 791  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||    
T  22774053 aatcggcaaatattattaaacgccatccccgcaagacgcaaggtatggacgaaactagatacaaatggtgccgcatatagacggtacaccataacca 22773957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 695 - 794
Target Start/End: Original strand, 31207011 - 31207110
Alignment:
Q  695 aatcggtaaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataaccacct 794  Q
    |||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||    
T  31207011 aatcggcaaatattattaaacgccatcctcgcaagacgcaaggtatggacgaaacaagatacaaatggtgccgtatataaacggtacaccataaccacct 31207110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 695 - 794
Target Start/End: Original strand, 12897925 - 12898024
Alignment:
Q  695 aatcggtaaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataaccacct 794  Q
    |||||| ||||||||||||||| ||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||    
T  12897925 aatcggcaaatattattaaacgtcatccccgcaagatgcaagatatggacgaaacaagatacaaatggtgccgcatatagacggtacaccattaccacct 12898024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 695 - 794
Target Start/End: Original strand, 32065934 - 32066032
Alignment:
Q  695 aatcggtaaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataaccacct 794  Q
    |||||| |||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||    
T  32065934 aatcggcaaatattattaaacgccatcaccgcaagatgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtaca-cataaccacct 32066032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 702 - 794
Target Start/End: Original strand, 16457131 - 16457223
Alignment:
Q  702 aaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataaccacct 794  Q
    ||||||||||||||| |||||| |||||||| ||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||    
T  16457131 aaatattattaaacgtcatccctgcaagacgtaaggtatggacgaaacaagatacaaatggtgccacatatagacggtacaccataaccacct 16457223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 702 - 794
Target Start/End: Original strand, 24995051 - 24995143
Alignment:
Q  702 aaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataaccacct 794  Q
    |||||||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||    
T  24995051 aaatattattgaacgccatccccgtaagacgcaaggtatggacgaaacaagatacaaatggtgccgcttatagacagtacaccataaccacct 24995143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 702 - 790
Target Start/End: Original strand, 35815900 - 35815988
Alignment:
Q  702 aaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataacc 790  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  35815900 aaatattattaaacgccatcctcgcaaaacgcaaggtatggacgaaacaagatacaaatggtgccacatatagacggtacaccataacc 35815988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 702 - 793
Target Start/End: Complemental strand, 3584163 - 3584071
Alignment:
Q  702 aaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaa-gatacaaatggtgccgcatatagacggtacaccataaccacc 793  Q
    ||||||||||||||||||||||| |||||||| ||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||    
T  3584163 aaatattattaaacgccatccccacaagacgcgaggtatgaacgaaacaaagatacaaatggtgccgcatatagacggtacaccataaccacc 3584071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 702 - 794
Target Start/End: Complemental strand, 9519931 - 9519839
Alignment:
Q  702 aaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataaccacct 794  Q
    |||||||||||||| |||||||  ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||    
T  9519931 aaatattattaaacaccatccctacaagacgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacagtacatcataaccacct 9519839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 696 - 792
Target Start/End: Complemental strand, 35821685 - 35821590
Alignment:
Q  696 atcggtaaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataaccac 792  Q
    ||||| |||||||||||||||||||| ||||||||||||||| |||||||| ||| |||||||||| ||||||||||||||||||||||||||||||    
T  35821685 atcggcaaatattattaaacgccatctccgcaagacgcaagg-atggacgaaacatgatacaaatgatgccgcatatagacggtacaccataaccac 35821590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 702 - 794
Target Start/End: Original strand, 37986511 - 37986603
Alignment:
Q  702 aaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataaccacct 794  Q
    ||||||||||||| | |||||||||||||||||||| | |||||| |||||||||||||||||| ||||||||||||||||||||||||||||    
T  37986511 aaatattattaaatgtcatccccgcaagacgcaaggcacggacgaaacaagatacaaatggtgctgcatatagacggtacaccataaccacct 37986603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 695 - 794
Target Start/End: Complemental strand, 36631254 - 36631156
Alignment:
Q  695 aatcggtaaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataaccacct 794  Q
    |||||| ||||||||||| |||||||||| ||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||| |||||    
T  36631254 aatcggaaaatattattatacgccatccctgcaagacgcaaggtatgaa-gaaacaagatacaaatggtgccgcatatagacggtacaccataatcacct 36631156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 702 - 793
Target Start/End: Original strand, 15821033 - 15821123
Alignment:
Q  702 aaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataaccacc 793  Q
    ||||||||||||||| |||||  |||||||||||||||||||||  ||||||||||||||||||||||||||||||||| ||||||||||||    
T  15821033 aaatattattaaacgtcatcct-gcaagacgcaaggtatggacggaacaagatacaaatggtgccgcatatagacggtataccataaccacc 15821123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 856 - 922
Target Start/End: Complemental strand, 20138696 - 20138630
Alignment:
Q  856 tcaagcactgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctca 922  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  20138696 tcaagcactgtaaacacggtatccaccaccgtccatcgtcactactcacctacaaagaacaccctca 20138630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 702 - 788
Target Start/End: Complemental strand, 13538410 - 13538324
Alignment:
Q  702 aaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataa 788  Q
    |||||||||||||||||||| || ||||||||||||||||||||| | || ||||||||||| |||||||||||||||||| |||||    
T  13538410 aaatattattaaacgccatctccacaagacgcaaggtatggacgaaagaatatacaaatggtaccgcatatagacggtacatcataa 13538324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 702 - 788
Target Start/End: Original strand, 13686064 - 13686150
Alignment:
Q  702 aaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataa 788  Q
    |||||||||||||||||||| || ||||||||||||||||||||| | || ||||||||||| |||||||||||||||||| |||||    
T  13686064 aaatattattaaacgccatctccacaagacgcaaggtatggacgaaagaatatacaaatggtaccgcatatagacggtacatcataa 13686150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 861 - 922
Target Start/End: Complemental strand, 9519764 - 9519703
Alignment:
Q  861 cactgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctca 922  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  9519764 cactgtaaacacggtatccaccaccgcccatcgtcactactcacccacaaagaacaccctca 9519703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 726 - 794
Target Start/End: Complemental strand, 27889247 - 27889179
Alignment:
Q  726 caagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataaccacct 794  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||    
T  27889247 caagacgcaaggtattgacgaaacaagatacaaatggtgccgcatatagactgtacaccataaccacct 27889179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 726 - 794
Target Start/End: Complemental strand, 27947905 - 27947837
Alignment:
Q  726 caagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataaccacct 794  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||    
T  27947905 caagacgcaaggtattgacgaaacaagatacaaatggtgccgcatatagactgtacaccataaccacct 27947837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 857 - 920
Target Start/End: Original strand, 16457288 - 16457351
Alignment:
Q  857 caagcactgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccct 920  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  16457288 caagcactgtaaacacggtatccaccaccgtccatcgtcactactcacccataaagaccaccct 16457351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 857 - 920
Target Start/End: Original strand, 41893215 - 41893278
Alignment:
Q  857 caagcactgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccct 920  Q
    |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  41893215 caagaactgtaaacacggtatccaccaccgaccatcgtcactactcacccacaaagaacaccct 41893278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 857 - 922
Target Start/End: Original strand, 24995207 - 24995272
Alignment:
Q  857 caagcactgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctca 922  Q
    |||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  24995207 caagcattgtaaacacggtatccaccaccgcccatcgtcactactcacgcacaaagaacaccctca 24995272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 858 - 922
Target Start/End: Original strand, 31207176 - 31207240
Alignment:
Q  858 aagcactgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctca 922  Q
    ||||||||||||||| |||||||||| || |||||||||||||||||||||||||||||||||||    
T  31207176 aagcactgtaaacacagtatccaccatcgcccatcgtcactactcacccacaaagaacaccctca 31207240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 695 - 755
Target Start/End: Complemental strand, 9659534 - 9659474
Alignment:
Q  695 aatcggtaaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagata 755  Q
    |||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  9659534 aatcggcaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaacaagata 9659474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 857 - 922
Target Start/End: Complemental strand, 22773883 - 22773818
Alignment:
Q  857 caagcactgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctca 922  Q
    |||||| |||||||| |||| ||||||| | |||||||||||||||||||||||||||||||||||    
T  22773883 caagcattgtaaacatggtaaccaccactgcccatcgtcactactcacccacaaagaacaccctca 22773818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 858 - 922
Target Start/End: Original strand, 34388821 - 34388884
Alignment:
Q  858 aagcactgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctca 922  Q
    ||||| |||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||    
T  34388821 aagcaatgtaaacacg-tatccaccaccgcctatcgtcactactcacccacaaagaacaccctca 34388884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 857 - 921
Target Start/End: Original strand, 37986671 - 37986735
Alignment:
Q  857 caagcactgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctc 921  Q
    |||||| ||||||||||||||| ||||||  ||||||||| ||||||||||||||||||||||||    
T  37986671 caagcattgtaaacacggtatctaccaccacccatcgtcattactcacccacaaagaacaccctc 37986735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 868 - 921
Target Start/End: Original strand, 32066119 - 32066172
Alignment:
Q  868 aacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctc 921  Q
    ||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  32066119 aacactgtatccaccaccgcccatcgtcactactcactcacaaagaacaccctc 32066172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 702 - 782
Target Start/End: Original strand, 38577442 - 38577522
Alignment:
Q  702 aaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtaca 782  Q
    ||||||||||||||| |||  |||||||| | || ||||| |||| |||| ||||||||| ||||||||||||||||||||    
T  38577442 aaatattattaaacgtcatttccgcaagatgtaatgtatgaacgaaacaatatacaaatgatgccgcatatagacggtaca 38577522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 867 - 922
Target Start/End: Original strand, 12898098 - 12898153
Alignment:
Q  867 aaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctca 922  Q
    ||||| || |||||| ||||| ||||||||||||||||||||||||||||||||||    
T  12898098 aaacatggaatccacaaccgttcatcgtcactactcacccacaaagaacaccctca 12898153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 727 - 793
Target Start/End: Original strand, 10837918 - 10837984
Alignment:
Q  727 aagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataaccacc 793  Q
    ||||||||||| ||| || | | ||||| ||||| ||||||||||||||||||||||||||||||||    
T  10837918 aagacgcaaggaatgaacaaaataagatgcaaatcgtgccgcatatagacggtacaccataaccacc 10837984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 861 - 911
Target Start/End: Complemental strand, 36631088 - 36631038
Alignment:
Q  861 cactgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaa 911  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||| ||||    
T  36631088 cactgtaaacacggtatccaccaccgcccatcgtaactactcacccccaaa 36631038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 753 - 794
Target Start/End: Original strand, 41893112 - 41893153
Alignment:
Q  753 atacaaatggtgccgcatatagacggtacaccataaccacct 794  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  41893112 atacaaatggtgtcgcatatagacggtacaccataaccacct 41893153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 750 - 794
Target Start/End: Original strand, 34388711 - 34388755
Alignment:
Q  750 aagatacaaatggtgccgcatatagacggtacaccataaccacct 794  Q
    ||||||||||| |||| ||||||||||||||||||||||||||||    
T  34388711 aagatacaaatagtgctgcatatagacggtacaccataaccacct 34388755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 857 - 920
Target Start/End: Complemental strand, 35821508 - 35821445
Alignment:
Q  857 caagcactgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccct 920  Q
    |||||||||||||||| ||||| | ||||| ||||| |||||||||| || |||||||||||||    
T  35821508 caagcactgtaaacacagtatctagcaccgcccatcatcactactcatcctcaaagaacaccct 35821445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 695 - 735
Target Start/End: Original strand, 34866309 - 34866349
Alignment:
Q  695 aatcggtaaatattattaaacgccatccccgcaagacgcaa 735  Q
    |||||| ||||||||||||||| ||||||||||||||||||    
T  34866309 aatcggcaaatattattaaacgtcatccccgcaagacgcaa 34866349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 861 - 917
Target Start/End: Original strand, 38577606 - 38577662
Alignment:
Q  861 cactgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacac 917  Q
    |||||||||||| |||||||| | | ||||||||||||||||| || ||||||||||    
T  38577606 cactgtaaacacagtatccacaatcatccatcgtcactactcatccccaaagaacac 38577662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 864 - 919
Target Start/End: Original strand, 35816066 - 35816121
Alignment:
Q  864 tgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccc 919  Q
    ||||||||| |||||||| |||  ||||| ||||||||||||| ||||||||||||    
T  35816066 tgtaaacacagtatccacaaccacccatcatcactactcacccccaaagaacaccc 35816121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 403; Significance: 0; HSPs: 38)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 8 - 449
Target Start/End: Original strand, 44352531 - 44352975
Alignment:
Q  8 tgatctgcaagtgaaagggaaaccttgatctagctcttgattagatgctaattaagaggataatgcatgtgaagttgatgggagggagagaaaagaagca 107  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44352531 tgatctgcaagtgaaagggaaaccttgatctagctcttgattaaatgctaattaagaggataatgcatgtgaagttgatgggagggagagaaaagaagca 44352630  T
Q  108 aagattaattttttgctacgcgcagaggagaggaatagagtaaagagaacgatgggacaaatgaaatgatcgagtagaaatagagaagagtttgcaggaa 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44352631 aagattaattttttgctacgcgcagaggagaggaatagagtaaagagaacgatgggacaaatgaaatgatcgagtagaaatagagaagagtttgcaggaa 44352730  T
Q  208 aaaaggctatagagaagagggtggtacaatgtccttttgaaagagacggtgagggtgtggttattaacttgtgttgtgagtcaaaatagatttgaattca 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  44352731 aaaaggctatagagaagagggtggtacaatgtccttttgaaagagacggtgagggtgtgtttattaacttgtgttgtgagtcaaaatagatttgaattca 44352830  T
Q  308 atatataaagatcatacaaaatgtcaatagaatttaatgtgtatctatctattttaggtttacactaatattttagagtgtaaattctcacaaaaagtat 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |    
T  44352831 atatataaagatcatacaaaatgtcaatagaatttaatgtgtatctatctattttaggtttacactattatcttagagtgtaaattctcacaaaaagttt 44352930  T
Q  408 tttttttct---ctcaactttctccctctccaacaatccaacctt 449  Q
    ||||||| |   |||||||||||||||||||||||||| ||||||    
T  44352931 tttttttttttcctcaactttctccctctccaacaatctaacctt 44352975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 488 - 794
Target Start/End: Original strand, 44353007 - 44353312
Alignment:
Q  488 attattgaaaatagtttatggtcaattttgagatgaaatcacccatcttcgtgtttttcttcttattttaacctaaacaaattattttcacataaatcta 587  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44353007 attattgaaaatagtttatgatcaattttgagatgaaatcacccatcttcgtgtttttcttcttattttaacctaaacaaattattttcacataaatcta 44353106  T
Q  588 gcnnnnnnncatgatttcgtcgtttaagttcggagttttgttgtttgtcgtcttctgcgacattatttgatttttcgccaaattgtagagttcattcaan 687  Q
    ||       |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||     
T  44353107 gc-ttttttcatgatttcgtcgtttaagttcagagttttgttgtttgttgtcttctgcgacattatttgatttttcgtcaaattgtagagttcattcaat 44353205  T
Q  688 nnnnnnnaatcggtaaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccata 787  Q
           ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |||||||||||    
T  44353206 tttttttaatcggtaaatattattaaacgccatccccgcaagacgcaaagtatggacgaaacaagatacaaatggtgccgcatatagatggtacaccata 44353305  T
Q  788 accacct 794  Q
    |||||||    
T  44353306 accacct 44353312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 695 - 794
Target Start/End: Original strand, 31971784 - 31971883
Alignment:
Q  695 aatcggtaaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataaccacct 794  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  31971784 aatcggcaaatattattaaacgccatccccgcaagacgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 31971883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 695 - 794
Target Start/End: Original strand, 5859932 - 5860031
Alignment:
Q  695 aatcggtaaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataaccacct 794  Q
    |||||| ||||||||||||||| ||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  5859932 aatcggcaaatattattaaacgtcatccccgcaagacgcatgatatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 5860031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 695 - 794
Target Start/End: Complemental strand, 10244612 - 10244513
Alignment:
Q  695 aatcggtaaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataaccacct 794  Q
    |||||| |||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||    
T  10244612 aatcggcaaatattattaaactccatctccgcaagacgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacagtacaccataaccacct 10244513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 702 - 793
Target Start/End: Complemental strand, 6585311 - 6585220
Alignment:
Q  702 aaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataaccacc 793  Q
    ||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||    
T  6585311 aaatattattaaacgccatccccgcaagatgcaaggaatggacgaaacaagatacaaatggtgccacatatagacggtacaccataaccacc 6585220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 695 - 794
Target Start/End: Original strand, 47325534 - 47325633
Alignment:
Q  695 aatcggtaaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataaccacct 794  Q
    |||||| ||||||||||||||| ||||| || |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||    
T  47325534 aatcggcaaatattattaaacgtcatcctcgtaagacgcaaggtatggacgaaacaagatacaaatggtgctgcatatagacggtacaccataaccacct 47325633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 695 - 794
Target Start/End: Original strand, 33434480 - 33434579
Alignment:
Q  695 aatcggtaaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataaccacct 794  Q
    |||||| ||||||||||||||||||||||||||| |||||||||||||||||  ||||||||||||||| | | ||||||||||||||||||||||||||    
T  33434480 aatcggcaaatattattaaacgccatccccgcaatacgcaaggtatggacgaagcaagatacaaatggttctgtatatagacggtacaccataaccacct 33434579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 702 - 794
Target Start/End: Original strand, 3419055 - 3419145
Alignment:
Q  702 aaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataaccacct 794  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| | ||||||  ||||||||||||||||||||||||    
T  3419055 aaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaacaagatacaaacgttgccgc--atagacggtacaccataaccacct 3419145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 702 - 794
Target Start/End: Original strand, 42454390 - 42454482
Alignment:
Q  702 aaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataaccacct 794  Q
    ||||||||||||||  ||||||||||||||||||| ||| ||||| ||||| ||||||||||||||||||||||| |||||||||||||||||    
T  42454390 aaatattattaaacatcatccccgcaagacgcaagatatagacgaaacaaggtacaaatggtgccgcatatagacagtacaccataaccacct 42454482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 697 - 792
Target Start/End: Original strand, 11378772 - 11378866
Alignment:
Q  697 tcggtaaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataaccac 792  Q
    |||| |||||||||||||||||| |||||||||||||||||||||||||| | |||||||| ||| ||||||||||| ||||||||||||||||||    
T  11378772 tcggcaaatattattaaacgccaaccccgcaagacgcaaggtatggacga-ataagatacagatgatgccgcatataaacggtacaccataaccac 11378866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 702 - 793
Target Start/End: Complemental strand, 34391607 - 34391516
Alignment:
Q  702 aaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataaccacc 793  Q
    ||||||||||||||| |||||||||| |||||| ||||||||||| |||||||||||||  ||||||||||||||| |||||||||||||||    
T  34391607 aaatattattaaacgtcatccccgcaggacgcagggtatggacgaaacaagatacaaataatgccgcatatagacgatacaccataaccacc 34391516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 709 - 794
Target Start/End: Original strand, 3419321 - 3419404
Alignment:
Q  709 attaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataaccacct 794  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||  ||||||||||||||||||||||||    
T  3419321 attaaacgccatccccgcaagacgcaaggtatggacgaaacaagatacaaacgttgccgc--atagacggtacaccataaccacct 3419404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 856 - 922
Target Start/End: Original strand, 44353375 - 44353441
Alignment:
Q  856 tcaagcactgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctca 922  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  44353375 tcaagcactgtaaacacggtatccaccaccgtccatcgtcactactcacctacaaagaacaccctca 44353441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 695 - 794
Target Start/End: Complemental strand, 25161240 - 25161141
Alignment:
Q  695 aatcggtaaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataaccacct 794  Q
    |||||| ||||||||||||||| |||||||| ||||   |||||||| |||| ||||||| |||||||||||| ||||||||||||||||||||||||||    
T  25161240 aatcggcaaatattattaaacgtcatccccgtaagatttaaggtatgaacgaaacaagatgcaaatggtgccgtatatagacggtacaccataaccacct 25161141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 731 - 794
Target Start/End: Complemental strand, 38306656 - 38306593
Alignment:
Q  731 cgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataaccacct 794  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  38306656 cgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 38306593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 696 - 794
Target Start/End: Original strand, 41089396 - 41089491
Alignment:
Q  696 atcggtaaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataaccacct 794  Q
    ||||| ||||||||||||| |||||| | |||||||  ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||    
T  41089396 atcggcaaatattattaaatgccatctctgcaagac--aaggtatggacgaaacaagatacaa-tggtgccgcatatagacggtacaccataaccacct 41089491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 696 - 789
Target Start/End: Complemental strand, 3867545 - 3867453
Alignment:
Q  696 atcggtaaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataac 789  Q
    ||||| ||||||||||||||  |||||| |||||||| ||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  3867545 atcggcaaatattattaaacttcatccc-gcaagacgtaaggtattgacgaaacaagatacaaatggtgccacatatagacggtacaccataac 3867453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 857 - 940
Target Start/End: Original strand, 31971947 - 31972032
Alignment:
Q  857 caagcactgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccct-cagat-aaactcccagacccc 940  Q
    |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| || || |||||||||||||||    
T  31971947 caagcactgtaaacacggtatcaaccaccgcccatcgtcactactcacccacaaagaacaccctccaaataaaactcccagacccc 31972032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 697 - 794
Target Start/End: Complemental strand, 37795426 - 37795329
Alignment:
Q  697 tcggtaaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataaccacct 794  Q
    |||| ||||||||||||||| | ||||| ||||||||||||||||||||| ||||||||||||||||| |||   || ||||||||||||||||||||    
T  37795426 tcggcaaatattattaaacgtcgtccccacaagacgcaaggtatggacgaaacaagatacaaatggtgtcgcgattaaacggtacaccataaccacct 37795329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 697 - 794
Target Start/End: Complemental strand, 37795754 - 37795657
Alignment:
Q  697 tcggtaaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataaccacct 794  Q
    |||| ||||||||||||||| | ||||| ||||||||||||||||||||| ||||||||||||||||| |||   || ||||||||||||||||||||    
T  37795754 tcggcaaatattattaaacgtcgtccccacaagacgcaaggtatggacgaaacaagatacaaatggtgtcgcgattaaacggtacaccataaccacct 37795657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 702 - 794
Target Start/End: Original strand, 48161697 - 48161788
Alignment:
Q  702 aaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataaccacct 794  Q
    ||||||||||||||| |||||| ||||||| |||| ||||||||| |||| |||||||| ||||||||||||||||| |||||||||||||||    
T  48161697 aaatattattaaacgtcatccctgcaagacacaagatatggacga-acaaaatacaaatagtgccgcatatagacggcacaccataaccacct 48161788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 862 - 922
Target Start/End: Complemental strand, 3867379 - 3867319
Alignment:
Q  862 actgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctca 922  Q
    |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||    
T  3867379 actgtaaacacgatatccaccaccgtccatcgtcactactcacccccaaagaacaccctca 3867319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 702 - 794
Target Start/End: Complemental strand, 43482329 - 43482238
Alignment:
Q  702 aaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataaccacct 794  Q
    ||||||||||||||| |||||||| | |||||||||||||||||| | ||||||||||| |||| ||||| ||||||||||||| ||||||||    
T  43482329 aaatattattaaacgtcatccccgta-gacgcaaggtatggacgaaataagatacaaatagtgctgcatacagacggtacaccacaaccacct 43482238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 857 - 940
Target Start/End: Original strand, 47325698 - 47325783
Alignment:
Q  857 caagcactgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctcaga--taaactcccagacccc 940  Q
    |||||||||||||||| ||||||| || || ||||||||||||||||||||||||||||||||||| |   |||||||||||||||    
T  47325698 caagcactgtaaacacagtatccatcatcgcccatcgtcactactcacccacaaagaacaccctcaaaataaaactcccagacccc 47325783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 695 - 757
Target Start/End: Original strand, 40726140 - 40726202
Alignment:
Q  695 aatcggtaaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagataca 757  Q
    |||||| ||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||    
T  40726140 aatcggcaaatattattaaatgtcatccccgcaagacgcaaggtatggacgaaacaagataca 40726202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 858 - 922
Target Start/End: Complemental strand, 37795256 - 37795192
Alignment:
Q  858 aagcactgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctca 922  Q
    ||||||||||||||||||||||||||||| ||||| | |||||| | ||||||||||||||||||    
T  37795256 aagcactgtaaacacggtatccaccaccgcccatcattactacttaaccacaaagaacaccctca 37795192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 858 - 921
Target Start/End: Complemental strand, 10244449 - 10244386
Alignment:
Q  858 aagcactgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctc 921  Q
    |||||| ||||||| ||||||||||| || |||||||||||||||||||||||||| |||||||    
T  10244449 aagcaccgtaaacatggtatccaccatcgcccatcgtcactactcacccacaaagaccaccctc 10244386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 857 - 940
Target Start/End: Complemental strand, 25161079 - 25160996
Alignment:
Q  857 caagcactgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctcagataaactcccagacccc 940  Q
    |||||| ||||||||  |||||||||| || ||||||||||||||||||||||||||||||| | | | |||||| ||||||||    
T  25161079 caagcaatgtaaacatagtatccaccaacgcccatcgtcactactcacccacaaagaacacctttaaaaaaactctcagacccc 25160996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 702 - 769
Target Start/End: Original strand, 35745488 - 35745555
Alignment:
Q  702 aaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgca 769  Q
    ||||||||||||||| |||| ||| || ||||||||||||||||| ||||||||||||||||| ||||    
T  35745488 aaatattattaaacgtcatctccgtaaaacgcaaggtatggacgaaacaagatacaaatggtgtcgca 35745555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 856 - 922
Target Start/End: Original strand, 40726317 - 40726382
Alignment:
Q  856 tcaagcactgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctca 922  Q
    |||||||| |||||||||||||||||||||| | ||| |||||||||| ||||||||||||||||||    
T  40726317 tcaagcacggtaaacacggtatccaccaccgcctatcatcactactca-ccacaaagaacaccctca 40726382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 864 - 920
Target Start/End: Original strand, 3419475 - 3419531
Alignment:
Q  864 tgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccct 920  Q
    |||||||| | ||||||||||||| |||||||||||||||| |||||||||||||||    
T  3419475 tgtaaacatgatatccaccaccgttcatcgtcactactcactcacaaagaacaccct 3419531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 869 - 922
Target Start/End: Complemental strand, 38306517 - 38306464
Alignment:
Q  869 acacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctca 922  Q
    ||||| |||||||||||  |||||||||||||||||| ||||||||||||||||    
T  38306517 acacgatatccaccaccacccatcgtcactactcacctacaaagaacaccctca 38306464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 857 - 920
Target Start/End: Original strand, 3419209 - 3419272
Alignment:
Q  857 caagcactgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccct 920  Q
    |||||| |||||||| | ||||||||||||| |||| ||||||||||| |||||| ||||||||    
T  3419209 caagcattgtaaacatgatatccaccaccgttcatcatcactactcactcacaaaaaacaccct 3419272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 857 - 920
Target Start/End: Original strand, 5860101 - 5860164
Alignment:
Q  857 caagcactgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccct 920  Q
    |||||||| | |||||||||| |||||  | |||||||||||||||| ||||||||||||||||    
T  5860101 caagcactattaacacggtattcaccattgcccatcgtcactactcatccacaaagaacaccct 5860164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 599 - 651
Target Start/End: Complemental strand, 12141435 - 12141383
Alignment:
Q  599 tgatttcgtcgtttaagttcggagttttgttgtttgtcgtcttctgcgacatt 651  Q
    |||||||||||| ||||| ||| |||||||||||||||||||| |||| ||||    
T  12141435 tgatttcgtcgtctaagtgcggcgttttgttgtttgtcgtcttgtgcggcatt 12141383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 713 - 784
Target Start/End: Complemental strand, 31225910 - 31225838
Alignment:
Q  713 aacgccatccccgcaagacgcaaggtatggacgagacaa-gatacaaatggtgccgcatatagacggtacacc 784  Q
    ||||||| |||||||||||||||||||||||||| | ||  ||| ||| ||||||  ||||||||||||||||    
T  31225910 aacgccaaccccgcaagacgcaaggtatggacgacataacaatataaaaggtgccatatatagacggtacacc 31225838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 713 - 784
Target Start/End: Complemental strand, 35401381 - 35401309
Alignment:
Q  713 aacgccatccccgcaagacgcaaggtatggacgagac-aagatacaaatggtgccgcatatagacggtacacc 784  Q
    ||||||||||||| ||||||||| |||||||||  || |||| ||||  |||||||||||||||||| |||||    
T  35401381 aacgccatccccgtaagacgcaaagtatggacggcacaaagaaacaataggtgccgcatatagacggaacacc 35401309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 88; Significance: 8e-42; HSPs: 40)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 8e-42
Query Start/End: Original strand, 695 - 794
Target Start/End: Original strand, 2392152 - 2392251
Alignment:
Q  695 aatcggtaaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataaccacct 794  Q
    |||||| ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  2392152 aatcggaaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 2392251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 88; E-Value: 8e-42
Query Start/End: Original strand, 695 - 794
Target Start/End: Original strand, 2393915 - 2394014
Alignment:
Q  695 aatcggtaaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataaccacct 794  Q
    |||||| ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  2393915 aatcggaaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 2394014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 702 - 791
Target Start/End: Complemental strand, 47236123 - 47236034
Alignment:
Q  702 aaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataacca 791  Q
    |||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||    
T  47236123 aaatattattaaacgccatccctgcaagacgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtataccataacca 47236034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 702 - 791
Target Start/End: Original strand, 50305230 - 50305319
Alignment:
Q  702 aaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataacca 791  Q
    ||||||||||||||||||| ||||||||||||||||||||||||  ||||||||||||||||| ||||||||||||||||||||||||||    
T  50305230 aaatattattaaacgccattcccgcaagacgcaaggtatggacggaacaagatacaaatggtgtcgcatatagacggtacaccataacca 50305319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 702 - 794
Target Start/End: Complemental strand, 21343772 - 21343680
Alignment:
Q  702 aaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataaccacct 794  Q
    ||||||||||||||| |||||| ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||    
T  21343772 aaatattattaaacgtcatcccggcaagacacaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacatcataaccacct 21343680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 695 - 794
Target Start/End: Complemental strand, 31483312 - 31483213
Alignment:
Q  695 aatcggtaaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataaccacct 794  Q
    |||||| |||||||||||||| |||||||| |||||||||||||||| || | |||||||||||||||||| ||||||||||||||||||||||||||||    
T  31483312 aatcggcaaatattattaaacaccatccccacaagacgcaaggtatgaacaaaacaagatacaaatggtgctgcatatagacggtacaccataaccacct 31483213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 695 - 794
Target Start/End: Complemental strand, 45164285 - 45164186
Alignment:
Q  695 aatcggtaaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataaccacct 794  Q
    |||||| ||||||||||||||   |||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||    
T  45164285 aatcggcaaatattattaaacattatccccgcaagatgcaaggtatggactaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 45164186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 703 - 794
Target Start/End: Original strand, 9583710 - 9583801
Alignment:
Q  703 aatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataaccacct 794  Q
    ||||||||||||||||||| ||| ||||| |||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  9583710 aatattattaaacgccatctccgtaagacacaaggtatagacgaaacaagatacaaatggtgccgcatatagacgatacaccataaccacct 9583801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 695 - 794
Target Start/End: Complemental strand, 19176938 - 19176839
Alignment:
Q  695 aatcggtaaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataaccacct 794  Q
    |||||| ||||||||||||||| ||| || ||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||    
T  19176938 aatcggcaaatattattaaacgtcattcctgcaagacgcaaagtatggacgaaacatgatacaaatggtgccgcatatagacggtacaccataacgacct 19176839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 702 - 793
Target Start/End: Original strand, 23328004 - 23328095
Alignment:
Q  702 aaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataaccacc 793  Q
    |||||||||||||||| ||||| |||| ||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||    
T  23328004 aaatattattaaacgctatccctgcaatacgcaaggtatggacgaaacaagatataaatggtgccgcatatatacggtacaccataaccacc 23328095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 695 - 794
Target Start/End: Original strand, 34475407 - 34475506
Alignment:
Q  695 aatcggtaaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataaccacct 794  Q
    |||||| | ||||||||||||| ||||||||||||||||| |||||| |||| ||||||||||||||||||| ||||||||||||| |||||||||||||    
T  34475407 aatcggcacatattattaaacgtcatccccgcaagacgcagggtatgaacgaaacaagatacaaatggtgccccatatagacggtataccataaccacct 34475506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 702 - 793
Target Start/End: Original strand, 40023225 - 40023316
Alignment:
Q  702 aaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataaccacc 793  Q
    ||||||||||||||  |||||||||||||||||  |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||    
T  40023225 aaatattattaaacatcatccccgcaagacgcattgtatggacgaaacaagatacaaatgatgccgcatatagacggtacaccataaccacc 40023316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 857 - 922
Target Start/End: Complemental strand, 47235966 - 47235901
Alignment:
Q  857 caagcactgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctca 922  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47235966 caagcactgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctca 47235901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 722 - 794
Target Start/End: Original strand, 30352115 - 30352187
Alignment:
Q  722 cccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataaccacct 794  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||    
T  30352115 cccgcaagacgcaaggtatggacgaaacaagatacaaatggtgccgcatatagaaggtacaccataaccacct 30352187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 702 - 793
Target Start/End: Complemental strand, 45399210 - 45399119
Alignment:
Q  702 aaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataaccacc 793  Q
    ||||||||||||||| |||| ||| ||||||| ||||||| |||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  45399210 aaatattattaaacgacatctccgaaagacgcgaggtatgaacgaaacaagatacaaacggtgccgcatatagacggtacaccataaccacc 45399119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 695 - 794
Target Start/End: Complemental strand, 17551389 - 17551290
Alignment:
Q  695 aatcggtaaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataaccacct 794  Q
    |||| |||||||||||||||||  ||||| |||||| ||| |||||| |||| |||| |||||||||||||||||||||||| |||||||||||||||||    
T  17551389 aatcagtaaatattattaaacgttatccctgcaagatgcagggtatgaacgaaacaaaatacaaatggtgccgcatatagactgtacaccataaccacct 17551290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 695 - 792
Target Start/End: Original strand, 4463734 - 4463831
Alignment:
Q  695 aatcggtaaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataaccac 792  Q
    |||||| ||||||||||||||| || |||| |||||||||||  |||||||| |||| | ||||||||||||||||||||||||| ||||||||||||    
T  4463734 aatcggcaaatattattaaacgtcaaccccacaagacgcaagacatggacgaaacaacacacaaatggtgccgcatatagacggtgcaccataaccac 4463831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 697 - 773
Target Start/End: Complemental strand, 37158735 - 37158660
Alignment:
Q  697 tcggtaaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatata 773  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  37158735 tcggcaaatattat-aaacgccatccccgcaagacgcaaggtatggacgaaacaggatacaaatggtgccgcatata 37158660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 857 - 924
Target Start/End: Complemental strand, 20612050 - 20611983
Alignment:
Q  857 caagcactgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctcaga 924  Q
    |||||||||||||||| |||||||||| || |||||||||||||||||||||||||||||||||||||    
T  20612050 caagcactgtaaacacagtatccaccatcgcccatcgtcactactcacccacaaagaacaccctcaga 20611983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 857 - 920
Target Start/End: Original strand, 34475569 - 34475632
Alignment:
Q  857 caagcactgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccct 920  Q
    |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  34475569 caagcaatgtaaacacggtatccaccaccgcccatcgtcactactcacccacaaagaacaccct 34475632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 702 - 793
Target Start/End: Complemental strand, 50560069 - 50559978
Alignment:
Q  702 aaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataaccacc 793  Q
    ||||||||||||||| ||||| ||||| ||||||| ||||||||| |||||||||||| | ||||||| ||||||||| |||||||||||||    
T  50560069 aaatattattaaacgtcatcctcgcaatacgcaagatatggacgaaacaagatacaaaagatgccgcacatagacggtgcaccataaccacc 50559978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 725 - 794
Target Start/End: Complemental strand, 43012779 - 43012710
Alignment:
Q  725 gcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataaccacct 794  Q
    ||||||||||||||||| |||| |||| ||||||||||||||||||||||||| ||||||||||||||||    
T  43012779 gcaagacgcaaggtatgaacgaaacaatatacaaatggtgccgcatatagacgatacaccataaccacct 43012710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 857 - 922
Target Start/End: Complemental strand, 53248169 - 53248104
Alignment:
Q  857 caagcactgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctca 922  Q
    |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| ||||    
T  53248169 caagcactgtaaacacggtaaccaccaccgcccatcgtcactactcacccacaaagaacactctca 53248104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 702 - 791
Target Start/End: Complemental strand, 53248325 - 53248236
Alignment:
Q  702 aaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataacca 791  Q
    ||||||||||||||| |||||||||||| || ||||||||||| | ||||||||||||||||| |||||||||   ||||||||||||||    
T  53248325 aaatattattaaacgtcatccccgcaaggcgtaaggtatggacaaaacaagatacaaatggtgtcgcatataggttgtacaccataacca 53248236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 858 - 918
Target Start/End: Original strand, 2392320 - 2392380
Alignment:
Q  858 aagcactgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacacc 918  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  2392320 aagcactgtaaacacggtatccaccaccgcccatcgtcactactcacccacaaataacacc 2392380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 858 - 918
Target Start/End: Original strand, 2394084 - 2394144
Alignment:
Q  858 aagcactgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacacc 918  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  2394084 aagcactgtaaacacggtatccaccaccgcccatcgtcactactcacccacaaataacacc 2394144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 702 - 790
Target Start/End: Original strand, 25506726 - 25506814
Alignment:
Q  702 aaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataacc 790  Q
    ||||||||||||||  |||||||||||||| |||| |||  || | |||| ||||||||||||||||||||||||||||||||||||||    
T  25506726 aaatattattaaacatcatccccgcaagacccaagatataaacaaaacaatatacaaatggtgccgcatatagacggtacaccataacc 25506814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 857 - 940
Target Start/End: Original strand, 30352254 - 30352337
Alignment:
Q  857 caagcactgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctcagataaactcccagacccc 940  Q
    |||| ||||||||||||||||||||||||  |||||||||||||||| |||||||||||||||| | | ||||||| |||||||    
T  30352254 caagtactgtaaacacggtatccaccaccacccatcgtcactactcatccacaaagaacaccctaaaaaaaactccgagacccc 30352337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 857 - 940
Target Start/End: Complemental strand, 43012643 - 43012558
Alignment:
Q  857 caagcactgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctcagat--aaactcccagacccc 940  Q
    |||||| ||||||||||||||||||| |||||||||| |||||||||||  ||||||||||||||| ||  ||||||| |||||||    
T  43012643 caagcattgtaaacacggtatccacccccgtccatcgccactactcacctccaaagaacaccctcaaattaaaactcctagacccc 43012558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 857 - 922
Target Start/End: Complemental strand, 19176772 - 19176707
Alignment:
Q  857 caagcactgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctca 922  Q
    ||||||| |||||||| |||||||||||| ||||||||||||||||||||  ||||||||||||||    
T  19176772 caagcacagtaaacacagtatccaccaccatccatcgtcactactcacccctaaagaacaccctca 19176707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 858 - 920
Target Start/End: Complemental strand, 31483150 - 31483088
Alignment:
Q  858 aagcactgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccct 920  Q
    ||||| |||||||| |||||||||||| || ||||||||||||| ||||||||||||||||||    
T  31483150 aagcaatgtaaacatggtatccaccactgttcatcgtcactactaacccacaaagaacaccct 31483088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 867 - 922
Target Start/End: Complemental strand, 17551210 - 17551155
Alignment:
Q  867 aaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctca 922  Q
    ||||| |||| ||||||||| |||||||||||||||||| ||||||||||||||||    
T  17551210 aaacaaggtaaccaccaccgcccatcgtcactactcaccgacaaagaacaccctca 17551155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 857 - 922
Target Start/End: Complemental strand, 45164123 - 45164058
Alignment:
Q  857 caagcactgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctca 922  Q
    |||||| |||||||||||||| || ||||| |||||||||||| ||||| ||||| ||||||||||    
T  45164123 caagcattgtaaacacggtattcatcaccgcccatcgtcactaatcacctacaaataacaccctca 45164058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 857 - 940
Target Start/End: Original strand, 9583868 - 9583952
Alignment:
Q  857 caagcactgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctcaga--taaactcccagacccc 940  Q
    ||||||| ||||||||| |||||||||||| | |||||||||||||| || ||||||||| ||||| |   |||||||||||||||    
T  9583868 caagcaccgtaaacacgatatccaccaccgcctatcgtcactactca-ccgcaaagaacatcctcaaaataaaactcccagacccc 9583952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 861 - 903
Target Start/End: Original strand, 40023389 - 40023431
Alignment:
Q  861 cactgtaaacacggtatccaccaccgtccatcgtcactactca 903  Q
    ||||||||||||||||||||| ||| |||||||||||||||||    
T  40023389 cactgtaaacacggtatccacaaccatccatcgtcactactca 40023431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 695 - 758
Target Start/End: Complemental strand, 47439347 - 47439284
Alignment:
Q  695 aatcggtaaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaa 758  Q
    |||||| |||||||| |||||| ||||||  ||||||  ||||||||||||| |||||||||||    
T  47439347 aatcggcaaatattactaaacgtcatccctacaagacataaggtatggacgaaacaagatacaa 47439284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 861 - 919
Target Start/End: Complemental strand, 45399060 - 45399002
Alignment:
Q  861 cactgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccc 919  Q
    ||||||||||||  ||||||| | | |||||||||||||||||||| ||| ||||||||    
T  45399060 cactgtaaacacaatatccacaatcatccatcgtcactactcacccccaacgaacaccc 45399002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 695 - 788
Target Start/End: Complemental strand, 5557011 - 5556918
Alignment:
Q  695 aatcggtaaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataa 788  Q
    |||||| ||||||||||||||| |||  ||| | || | ||||| || |||| ||||||||||||| ||   ||||||||| ||||||||||||    
T  5557011 aatcggcaaatattattaaacgtcatttccgtaggatgtaaggtttgaacgaaacaagatacaaatagttatgcatatagatggtacaccataa 5556918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 857 - 906
Target Start/End: Complemental strand, 7105109 - 7105060
Alignment:
Q  857 caagcactgtaaacacggtatccaccaccgtccatcgtcactactcaccc 906  Q
    |||||||| |||| || ||||||||||||  |||||||||||||||||||    
T  7105109 caagcactataaaaacagtatccaccaccacccatcgtcactactcaccc 7105060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 861 - 918
Target Start/End: Original strand, 23328167 - 23328224
Alignment:
Q  861 cactgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacacc 918  Q
    |||||||| |||  ||||||| |||  ||||||||||||||||||| |||||||||||    
T  23328167 cactgtaagcacaatatccacaaccacccatcgtcactactcacccccaaagaacacc 23328224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 84; Significance: 2e-39; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 702 - 789
Target Start/End: Original strand, 14436923 - 14437010
Alignment:
Q  702 aaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataac 789  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  14436923 aaatattattaaacgccatccccgcaagacgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataac 14437010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 695 - 794
Target Start/End: Original strand, 39338510 - 39338609
Alignment:
Q  695 aatcggtaaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataaccacct 794  Q
    |||||| ||||||||||||||||||||  || ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  39338510 aatcggcaaatattattaaacgccatcatcgtaagacgcaatgtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 39338609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 711 - 793
Target Start/End: Original strand, 17116553 - 17116635
Alignment:
Q  711 taaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataaccacc 793  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||    
T  17116553 taaacgtcatccccgcaagacgcaaggtatggacgagacaagatacaaatgatgccgcatatagacggtacactataaccacc 17116635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 704 - 792
Target Start/End: Complemental strand, 387599 - 387511
Alignment:
Q  704 atattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataaccac 792  Q
    ||||||||||||| |||| ||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  387599 atattattaaacgtcatcaccgcaagtcgcagggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccac 387511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 702 - 794
Target Start/End: Original strand, 41877208 - 41877300
Alignment:
Q  702 aaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataaccacct 794  Q
    |||||||||||||| |||||||||||||||||||| ||||||||| |||| ||||||||||| ||| ||||||||||||||||||||||||||    
T  41877208 aaatattattaaactccatccccgcaagacgcaagatatggacgaaacaatatacaaatggtaccgtatatagacggtacaccataaccacct 41877300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 695 - 794
Target Start/End: Complemental strand, 10524529 - 10524431
Alignment:
Q  695 aatcggtaaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataaccacct 794  Q
    |||||| |||||||||||||||||| ||| |||||||||||||||||||||| |||| ||||||||||||| ||||||||| ||||||||||||||||||    
T  10524529 aatcggcaaatattattaaacgcca-ccctgcaagacgcaaggtatggacgaaacaatatacaaatggtgcagcatatagatggtacaccataaccacct 10524431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 702 - 793
Target Start/End: Original strand, 14106179 - 14106269
Alignment:
Q  702 aaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataaccacc 793  Q
    ||||||||||||||||||||| ||||||||||| |||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||    
T  14106179 aaatattattaaacgccatcctcgcaagacgcagggtatg-acgaaacaagatagaaatggtgccgcatatagacggtacaccataaccacc 14106269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 695 - 790
Target Start/End: Original strand, 43816096 - 43816191
Alignment:
Q  695 aatcggtaaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataacc 790  Q
    |||||| ||||||||||||||| ||| ||||||| ||||||||||||||||| ||||  |||||||| ||||||||||||||||||||||||||||    
T  43816096 aatcggcaaatattattaaacgtcattcccgcaaaacgcaaggtatggacgaaacaaagtacaaatgatgccgcatatagacggtacaccataacc 43816191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 695 - 792
Target Start/End: Complemental strand, 3745773 - 3745676
Alignment:
Q  695 aatcggtaaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataaccac 792  Q
    |||||| ||||||||||||| | |||||||  |||||||||||||||||||| |||||||||||||||||| ||||||||| |||||| |||||||||    
T  3745773 aatcggcaaatattattaaatgtcatccccataagacgcaaggtatggacgaaacaagatacaaatggtgctgcatatagatggtacatcataaccac 3745676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 702 - 791
Target Start/End: Original strand, 13512495 - 13512584
Alignment:
Q  702 aaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataacca 791  Q
    ||||||||||||||| ||| |||||||||||||| |||||||||| |||| ||||||||| |||||||||||||||||||| ||||||||    
T  13512495 aaatattattaaacgtcattcccgcaagacgcaatgtatggacgaaacaaaatacaaatgatgccgcatatagacggtacaacataacca 13512584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 702 - 790
Target Start/End: Complemental strand, 5254677 - 5254590
Alignment:
Q  702 aaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataacc 790  Q
    ||||||||||||||| ||||| ||||||||| ||||||||||||| | | |||||||||||||||||||||||||||||||||||||||    
T  5254677 aaatattattaaacgtcatcctcgcaagacgtaaggtatggacgaaata-gatacaaatggtgccgcatatagacggtacaccataacc 5254590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 702 - 793
Target Start/End: Complemental strand, 7874702 - 7874610
Alignment:
Q  702 aaatattattaaa-cgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataaccacc 793  Q
    ||||||||||||| |||||||| |||||||| |||||||| ||| | ||||||||||||||| ||||||||||||||||||||||||||||||    
T  7874702 aaatattattaaaacgccatcctcgcaagacacaaggtatagacaaaacaagatacaaatggcgccgcatatagacggtacaccataaccacc 7874610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 703 - 792
Target Start/End: Original strand, 45311461 - 45311550
Alignment:
Q  703 aatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataaccac 792  Q
    ||||||||||||||||| |||||||||| |||||| | |||||| ||||||||||||||||||| |||||| |||| |||||||||||||    
T  45311461 aatattattaaacgccaaccccgcaagatgcaaggaaaggacgaaacaagatacaaatggtgccacatatatacggaacaccataaccac 45311550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 857 - 921
Target Start/End: Complemental strand, 10524368 - 10524304
Alignment:
Q  857 caagcactgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctc 921  Q
    ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  10524368 caagcaccgtaaacacggtatccaccaccgcccatcgtcactactcacccacaaagaacaccctc 10524304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 702 - 794
Target Start/End: Complemental strand, 14405623 - 14405532
Alignment:
Q  702 aaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataaccacct 794  Q
    |||||||||||||||  || || |||||||| |||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||||||    
T  14405623 aaatattattaaacgttattcctgcaagacgtaaggtatgaacga-acaagatacaaatggtgctgcatatagacggtacaccataaccacct 14405532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 858 - 922
Target Start/End: Original strand, 17116693 - 17116757
Alignment:
Q  858 aagcactgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctca 922  Q
    ||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||    
T  17116693 aagcactgtaaacacggtatccaccaccgcccatcgtcattactcacccacaaagaacaccctca 17116757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 696 - 772
Target Start/End: Complemental strand, 15457893 - 15457817
Alignment:
Q  696 atcggtaaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatat 772  Q
    ||||| ||||| ||||||||| ||||||||||||||||| | ||||||||| |||||||||||||||||||||||||    
T  15457893 atcggcaaataatattaaacgtcatccccgcaagacgcatgatatggacgaaacaagatacaaatggtgccgcatat 15457817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 702 - 790
Target Start/End: Original strand, 43248883 - 43248971
Alignment:
Q  702 aaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataacc 790  Q
    ||||||||||||||| ||||| | |||||| |||||||||||||| |||||||| |||||| ||||||||||||||||| | |||||||    
T  43248883 aaatattattaaacgtcatcctcacaagacacaaggtatggacgaaacaagatataaatggcgccgcatatagacggtatatcataacc 43248971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 702 - 793
Target Start/End: Complemental strand, 7461100 - 7461010
Alignment:
Q  702 aaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataaccacc 793  Q
    ||||||||||||||| |||||||||||||||||  ||||| |||| |||| ||||||||||||  |||||||||| ||||||||||||||||    
T  7461100 aaatattattaaacgtcatccccgcaagacgcagagtatg-acgaaacaaaatacaaatggtgttgcatatagacagtacaccataaccacc 7461010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 695 - 778
Target Start/End: Complemental strand, 7455683 - 7455601
Alignment:
Q  695 aatcggtaaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacgg 778  Q
    |||| ||||||| ||||||||| ||||||||||||||||| |||||| |||| | |||||||||||||||||||| ||||||||    
T  7455683 aatcagtaaataatattaaacgtcatccccgcaagacgca-ggtatgaacgaaataagatacaaatggtgccgcaaatagacgg 7455601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 857 - 922
Target Start/End: Original strand, 39338679 - 39338743
Alignment:
Q  857 caagcactgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctca 922  Q
    ||||||||||||||| | ||||||||| || |||||||||||||||||||||||||||||||||||    
T  39338679 caagcactgtaaacaag-tatccaccatcgcccatcgtcactactcacccacaaagaacaccctca 39338743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 695 - 763
Target Start/End: Original strand, 25280964 - 25281032
Alignment:
Q  695 aatcggtaaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggt 763  Q
    |||||| ||||||||||||||| ||||||| ||||||||| ||||||||||| |||||||| |||||||    
T  25280964 aatcggaaaatattattaaacgtcatccccacaagacgcagggtatggacgaaacaagatataaatggt 25281032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 695 - 761
Target Start/End: Complemental strand, 9823761 - 9823695
Alignment:
Q  695 aatcggtaaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatg 761  Q
    |||||| |||||||||||||||||||| ||||||||| ||||||||| | || ||||||||||||||    
T  9823761 aatcggcaaatattattaaacgccatctccgcaagacacaaggtatgaatgaaacaagatacaaatg 9823695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 705 - 791
Target Start/End: Original strand, 22888552 - 22888637
Alignment:
Q  705 tattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataacca 791  Q
    |||||||||| | |||||| ||||||||||| ||||||| || ||||| || |||||||||| ||||||||||||| | ||||||||    
T  22888552 tattattaaatgtcatccc-gcaagacgcaatgtatggatgaaacaaggtagaaatggtgccacatatagacggtatatcataacca 22888637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 857 - 940
Target Start/End: Complemental strand, 387442 - 387357
Alignment:
Q  857 caagcactgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctcaga--taaactcccagacccc 940  Q
    |||||| |||||||||   || |||||||| |||||||||||| |||||| ||||||||||||||| |   |||||||||||||||    
T  387442 caagcattgtaaacacaaaattcaccaccgcccatcgtcactattcacccccaaagaacaccctcaaaataaaactcccagacccc 387357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 861 - 919
Target Start/End: Complemental strand, 5254515 - 5254459
Alignment:
Q  861 cactgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccc 919  Q
    |||||||||||| |||||||| |||  ||||||||||||||||||  ||||||||||||    
T  5254515 cactgtaaacacagtatccacaaccacccatcgtcactactcacc--caaagaacaccc 5254459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 861 - 916
Target Start/End: Complemental strand, 7874554 - 7874500
Alignment:
Q  861 cactgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaaca 916  Q
    |||||||||||| |||||||| |||  ||||||||||||||||||| |||||||||    
T  7874554 cactgtaaacacagtatccacaaccacccatcgtcactactcaccc-caaagaaca 7874500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 864 - 919
Target Start/End: Original strand, 14106342 - 14106397
Alignment:
Q  864 tgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccc 919  Q
    ||||||||| |||||||| |||   |||||||||||||||||| ||||||||||||    
T  14106342 tgtaaacacagtatccacaaccactcatcgtcactactcacccccaaagaacaccc 14106397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 763 - 792
Target Start/End: Complemental strand, 15457307 - 15457278
Alignment:
Q  763 tgccgcatatagacggtacaccataaccac 792  Q
    ||||||||||||||||||||||||||||||    
T  15457307 tgccgcatatagacggtacaccataaccac 15457278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 2e-39; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 695 - 794
Target Start/End: Complemental strand, 6804969 - 6804871
Alignment:
Q  695 aatcggtaaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataaccacct 794  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||    
T  6804969 aatcggtaaatattattaaacgctatccccgcaagacgcaaggtatggacga-aaaagatacaaatggtgccgcatatagacggtacaccataaccacct 6804871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 695 - 794
Target Start/End: Original strand, 30685573 - 30685672
Alignment:
Q  695 aatcggtaaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataaccacct 794  Q
    |||||| ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||    
T  30685573 aatcggcaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaacaagatacaaatggtgccgcatatagatggtacaccataaccacct 30685672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 695 - 793
Target Start/End: Original strand, 46814114 - 46814212
Alignment:
Q  695 aatcggtaaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataaccacc 793  Q
    |||| ||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  46814114 aatcagtaaatattattaaacgccatcctcgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacc 46814212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 695 - 794
Target Start/End: Original strand, 31584689 - 31584787
Alignment:
Q  695 aatcggtaaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataaccacct 794  Q
    |||||| |||||||||||||| |||||| |||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  31584689 aatcggcaaatattattaaacaccatcctcgcaagacgcaaggtatg-acgaaacaagatacaaatggtgccgcatatagacgatacaccataaccacct 31584787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 702 - 792
Target Start/End: Original strand, 24449587 - 24449676
Alignment:
Q  702 aaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataaccac 792  Q
    |||||||||||||||||||||| |||||| ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  24449587 aaatattattaaacgccatccc-gcaagatgcaaggtatggacgaaacaagatacaaatggtgctgcatatagacggtacaccataaccac 24449676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 702 - 794
Target Start/End: Original strand, 40216162 - 40216254
Alignment:
Q  702 aaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataaccacct 794  Q
    ||||||||||||||| ||||| |||||||||| || |||||||||  |||||||||||||||||||||||||||||||||| |||||||||||    
T  40216162 aaatattattaaacgtcatcctcgcaagacgccagatatggacgaatcaagatacaaatggtgccgcatatagacggtacatcataaccacct 40216254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 695 - 792
Target Start/End: Complemental strand, 7002619 - 7002522
Alignment:
Q  695 aatcggtaaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataaccac 792  Q
    |||||| ||||||||||||||| ||||| ||||| | | ||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||    
T  7002619 aatcggcaaatattattaaacgtcatcctcgcaaaatgtaaggtatggacgaaacaagatacaaaaggtgccgcatataaacggtacaccataaccac 7002522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 695 - 792
Target Start/End: Complemental strand, 14320755 - 14320658
Alignment:
Q  695 aatcggtaaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataaccac 792  Q
    |||||| ||||||||||||||| ||||||| ||||| ||||||||||||| | || | |||||||||||| |||||||||||||||||||||||||||    
T  14320755 aatcggcaaatattattaaacgtcatccccacaagatgcaaggtatggacaaaaccaaatacaaatggtgtcgcatatagacggtacaccataaccac 14320658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 695 - 794
Target Start/End: Original strand, 5389077 - 5389171
Alignment:
Q  695 aatcggtaaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataaccacct 794  Q
    |||||| |||||||||||||||||||||||     ||||||||||||||||| | ||||||||||||||||||||||||||||| |||| ||||||||||    
T  5389077 aatcggaaaatattattaaacgccatcccc-----acgcaaggtatggacgaaataagatacaaatggtgccgcatatagacggcacactataaccacct 5389171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 857 - 922
Target Start/End: Original strand, 24449743 - 24449808
Alignment:
Q  857 caagcactgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctca 922  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  24449743 caagcactgtaaacacggtatccaccaccgcccatcgtcactactcacccacaaataacaccctca 24449808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 702 - 794
Target Start/End: Complemental strand, 5459580 - 5459493
Alignment:
Q  702 aaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataaccacct 794  Q
    |||||||||||||||     ||||||| |||||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||||    
T  5459580 aaatattattaaacg-----cccgcaatacgcaaggtatggacgaagcaacatacaaatggtgccgcatatagacggtacaccataaccacct 5459493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 702 - 790
Target Start/End: Original strand, 27031497 - 27031585
Alignment:
Q  702 aaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataacc 790  Q
    ||||||||||||||| ||||| ||||||||||||| ||||||||  |||| ||| ||||||||||||||||| ||||||||||||||||    
T  27031497 aaatattattaaacgtcatcctcgcaagacgcaagatatggacggaacaatatataaatggtgccgcatatatacggtacaccataacc 27031585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 702 - 794
Target Start/End: Complemental strand, 41920882 - 41920790
Alignment:
Q  702 aaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataaccacct 794  Q
    ||||||||||||||| |||| |||||||||| ||||||||||||| | || |||||||| |||| |||||||||||||||||| |||||||||    
T  41920882 aaatattattaaacgtcatctccgcaagacgtaaggtatggacgaaataaaatacaaattgtgctgcatatagacggtacaccgtaaccacct 41920790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 861 - 918
Target Start/End: Complemental strand, 5459425 - 5459368
Alignment:
Q  861 cactgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacacc 918  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  5459425 cactgtaaacacggtatccaccaccgcccatcgtcactactcacccacaaagaacacc 5459368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 857 - 921
Target Start/End: Original strand, 46692632 - 46692696
Alignment:
Q  857 caagcactgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctc 921  Q
    ||||||||||||||||| |||| ||||||| ||||||||||||||||||||||||||||||||||    
T  46692632 caagcactgtaaacacgatatcaaccaccgcccatcgtcactactcacccacaaagaacaccctc 46692696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 695 - 794
Target Start/End: Original strand, 24684142 - 24684240
Alignment:
Q  695 aatcggtaaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataaccacct 794  Q
    |||||| ||||||||||| | | |||||| |||||| |||||||||| || | ||||||||||||||||||| ||||||||||||||||||||| |||||    
T  24684142 aatcggcaaatattattatatgtcatccctgcaagatgcaaggtatgaacaa-acaagatacaaatggtgccacatatagacggtacaccataatcacct 24684240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 857 - 920
Target Start/End: Complemental strand, 6804808 - 6804745
Alignment:
Q  857 caagcactgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccct 920  Q
    ||||||||||||| || ||||||||||||| ||||||||||| |||||||||||||||||||||    
T  6804808 caagcactgtaaatacagtatccaccaccgcccatcgtcactcctcacccacaaagaacaccct 6804745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 748 - 793
Target Start/End: Complemental strand, 24659309 - 24659264
Alignment:
Q  748 acaagatacaaatggtgccgcatatagacggtacaccataaccacc 793  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  24659309 acaagatacaaatggtgccgcatatagacggtacaccataaccacc 24659264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 857 - 922
Target Start/End: Complemental strand, 41920725 - 41920660
Alignment:
Q  857 caagcactgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctca 922  Q
    |||||| |||||||||||||| |||||||| | |||||||||||||||||||||| ||||||||||    
T  41920725 caagcaatgtaaacacggtattcaccaccgcctatcgtcactactcacccacaaaaaacaccctca 41920660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 857 - 917
Target Start/End: Original strand, 30685737 - 30685797
Alignment:
Q  857 caagcactgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacac 917  Q
    |||||| ||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||    
T  30685737 caagcaatgtaaacacggtatccaccaccgcccatcttcactacacacccacaaagaacac 30685797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 857 - 940
Target Start/End: Original strand, 5389235 - 5389319
Alignment:
Q  857 caagcactgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctcaga--taaactcccagacccc 940  Q
    ||||||| |||||||||||||||||||||| |||||||||||||||||  || ||||||||||||| |   |||||||||||||||    
T  5389235 caagcaccgtaaacacggtatccaccaccgcccatcgtcactactcacttac-aagaacaccctcaaaataaaactcccagacccc 5389319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 748 - 794
Target Start/End: Original strand, 46692521 - 46692567
Alignment:
Q  748 acaagatacaaatggtgccgcatatagacggtacaccataaccacct 794  Q
    |||||||| ||||||||||||||| ||||||||||||||||||||||    
T  46692521 acaagataaaaatggtgccgcataaagacggtacaccataaccacct 46692567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 863 - 919
Target Start/End: Original strand, 46814286 - 46814342
Alignment:
Q  863 ctgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccc 919  Q
    |||||||||| |||||||| |||||||||||||||||||||||  |||| |||||||    
T  46814286 ctgtaaacacagtatccacaaccgtccatcgtcactactcacctccaaataacaccc 46814342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 863 - 903
Target Start/End: Original strand, 24684310 - 24684350
Alignment:
Q  863 ctgtaaacacggtatccaccaccgtccatcgtcactactca 903  Q
    ||||||||||| |||||||||||| ||||||||||||||||    
T  24684310 ctgtaaacacgatatccaccaccgcccatcgtcactactca 24684350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 861 - 901
Target Start/End: Original strand, 31584854 - 31584894
Alignment:
Q  861 cactgtaaacacggtatccaccaccgtccatcgtcactact 901  Q
    ||||||||||||||||||||||||||  |||||||||||||    
T  31584854 cactgtaaacacggtatccaccaccgctcatcgtcactact 31584894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 859 - 906
Target Start/End: Complemental strand, 32882632 - 32882585
Alignment:
Q  859 agcactgtaaacacggtatccaccaccgtccatcgtcactactcaccc 906  Q
    ||||||||||||||| |||||| ||||  |||||||||||||||||||    
T  32882632 agcactgtaaacacgatatccaacaccacccatcgtcactactcaccc 32882585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 887 - 916
Target Start/End: Original strand, 6764224 - 6764253
Alignment:
Q  887 tccatcgtcactactcacccacaaagaaca 916  Q
    ||||||||||||||||||||||||||||||    
T  6764224 tccatcgtcactactcacccacaaagaaca 6764253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 893 - 922
Target Start/End: Original strand, 31585608 - 31585637
Alignment:
Q  893 gtcactactcacccacaaagaacaccctca 922  Q
    ||||||||||||||||||||||||||||||    
T  31585608 gtcactactcacccacaaagaacaccctca 31585637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 80; Significance: 5e-37; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 695 - 794
Target Start/End: Complemental strand, 35329439 - 35329340
Alignment:
Q  695 aatcggtaaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataaccacct 794  Q
    |||||| |||||||| |||||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||    
T  35329439 aatcggcaaatattagtaaacgccatccccgcaagacgtaaggtatggacgaaacaagatacaaatggtgctgcatatagacggtacaccataaccacct 35329340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 695 - 794
Target Start/End: Original strand, 27555579 - 27555679
Alignment:
Q  695 aatcggtaaatattattaaacgccatcccc-gcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataaccacc 793  Q
    |||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||    
T  27555579 aatcggcaaatattattaaacgccatcccccgcaagacgcaaggtatggacgaaacaagatacaaattgtgccgcatatagatggtacaccataaccacc 27555678  T
Q  794 t 794  Q
    |    
T  27555679 t 27555679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 695 - 794
Target Start/End: Complemental strand, 7703118 - 7703020
Alignment:
Q  695 aatcggtaaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataaccacct 794  Q
    |||||| ||||||||||||||| |||||||||||||| ||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||    
T  7703118 aatcggcaaatattattaaacgtcatccccgcaagacacaaggtatggatgaaa-aagatacaaatggtgccgcatatagacggtacaccataaccacct 7703020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 702 - 794
Target Start/End: Complemental strand, 30964862 - 30964770
Alignment:
Q  702 aaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataaccacct 794  Q
    |||||||||||||| ||||||| |||||||||||||||||||||| |||||||||||||| ||  ||||||||||||||||||||||||||||    
T  30964862 aaatattattaaacaccatccctgcaagacgcaaggtatggacgaaacaagatacaaatgatgttgcatatagacggtacaccataaccacct 30964770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 695 - 794
Target Start/End: Original strand, 8705789 - 8705888
Alignment:
Q  695 aatcggtaaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataaccacct 794  Q
    |||||| ||||||||||||||| ||||||  |||||||| ||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||    
T  8705789 aatcggcaaatattattaaacgtcatcccttcaagacgcgaggtatggacgaggcaggatacaaatggtgctgcatatagacggtacaccataaccacct 8705888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 702 - 792
Target Start/End: Original strand, 46698435 - 46698525
Alignment:
Q  702 aaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataaccac 792  Q
    ||||||||||||||| |||||  | |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||    
T  46698435 aaatattattaaacgtcatccatgaaagacgcaaggtatggtcgaaacaagatacaaatggtgccgcatatagacggtacaccataaccac 46698525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 702 - 790
Target Start/End: Complemental strand, 2826206 - 2826118
Alignment:
Q  702 aaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataacc 790  Q
    ||||||||||||||| |||| | |||||||||||||||||||||  |||||||||||||||||||||||||| ||||||||||||||||    
T  2826206 aaatattattaaacgtcatctctgcaagacgcaaggtatggacggaacaagatacaaatggtgccgcatatatacggtacaccataacc 2826118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 695 - 794
Target Start/End: Complemental strand, 4306136 - 4306038
Alignment:
Q  695 aatcggtaaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataaccacct 794  Q
    |||||| ||||||||||||| | |||||||| ||||||||||||||| |||| | |||||| ||||||||||||||||||||||||||||||||||||||    
T  4306136 aatcggcaaatattattaaatgtcatccccggaagacgcaaggtatgaacgaaa-aagatataaatggtgccgcatatagacggtacaccataaccacct 4306038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 695 - 794
Target Start/End: Complemental strand, 8255459 - 8255360
Alignment:
Q  695 aatcggtaaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataaccacct 794  Q
    |||||| |||||||||||||||| ||| ||||||||   ||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||    
T  8255459 aatcggcaaatattattaaacgctatctccgcaagatataaggtgtggacgagacaagatacaaatgatgccgcatatagacggtacatcataaccacct 8255360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 695 - 794
Target Start/End: Complemental strand, 8268877 - 8268778
Alignment:
Q  695 aatcggtaaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataaccacct 794  Q
    |||||| |||||||||||||||| ||| ||||||||   ||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||    
T  8268877 aatcggcaaatattattaaacgctatctccgcaagatataaggtgtggacgagacaagatacaaatgatgccgcatatagacggtacatcataaccacct 8268778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 702 - 790
Target Start/End: Original strand, 35341007 - 35341097
Alignment:
Q  702 aaatattattaaacgccatcccc--gcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataacc 790  Q
    ||||||||||||||| |||||||  ||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  35341007 aaatattattaaacgtcatccccccgcaagacgcaatgtatggacgaaacaagatacaaatggtgccacatatagacggtacaccataacc 35341097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 702 - 793
Target Start/End: Original strand, 31050317 - 31050408
Alignment:
Q  702 aaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataaccacc 793  Q
    ||||||||||||||| | ||||||||||| || | |||||||||| |||||||||||||| || ||||||||||||||||||||||||||||    
T  31050317 aaatattattaaacgtcgtccccgcaagatgcgatgtatggacgaaacaagatacaaatgatgtcgcatatagacggtacaccataaccacc 31050408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 702 - 792
Target Start/End: Complemental strand, 49528511 - 49528421
Alignment:
Q  702 aaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataaccac 792  Q
    |||||| ||||||| ||| |||||||| ||  ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||    
T  49528511 aaatatcattaaacaccaaccccgcaaaacataaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccaaaaccac 49528421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 702 - 778
Target Start/End: Complemental strand, 9750191 - 9750116
Alignment:
Q  702 aaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacgg 778  Q
    ||||||||||||||| ||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||    
T  9750191 aaatattattaaacgtcatccccgcaagacgca-ggtttggacgaaacaagatacaaatggtgccgcatatagacgg 9750116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 702 - 792
Target Start/End: Original strand, 36689461 - 36689551
Alignment:
Q  702 aaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataaccac 792  Q
    |||||||||||||  ||||| ||||||||||| |||||||||||| | ||||||||||||||  |||||||||||||||||| ||||||||    
T  36689461 aaatattattaaataccatctccgcaagacgcgaggtatggacgaaataagatacaaatggtatcgcatatagacggtacactataaccac 36689551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 711 - 794
Target Start/End: Complemental strand, 20465005 - 20464922
Alignment:
Q  711 taaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataaccacct 794  Q
    |||||| ||||| | ||||| |||||||||| | || |||||||||||||||||||| ||||||||||||||||||||||||||    
T  20465005 taaacgtcatcctcacaagatgcaaggtatgaaagaaacaagatacaaatggtgccgtatatagacggtacaccataaccacct 20464922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 696 - 794
Target Start/End: Original strand, 11281375 - 11281473
Alignment:
Q  696 atcggtaaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataaccacct 794  Q
    ||||| |||||||||| |||| |||| || ||||||||||| ||||||||| ||| |||| ||||||||| | |||||||||||| |||||||||||||    
T  11281375 atcggcaaatattattgaacgtcatctccacaagacgcaagatatggacgaaacatgatataaatggtgctgtatatagacggtataccataaccacct 11281473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 856 - 922
Target Start/End: Original strand, 30167377 - 30167442
Alignment:
Q  856 tcaagcactgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctca 922  Q
    ||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||    
T  30167377 tcaagcactgtaaacacggtatccaccaccg-ccaacgtcaccactcacccacaaagaacaccctca 30167442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 857 - 922
Target Start/End: Complemental strand, 8255295 - 8255230
Alignment:
Q  857 caagcactgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctca 922  Q
    |||||||||||||||| |||||||||||   |||||||||||||||||||||||||||||||||||    
T  8255295 caagcactgtaaacacagtatccaccacatcccatcgtcactactcacccacaaagaacaccctca 8255230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 857 - 922
Target Start/End: Complemental strand, 8268713 - 8268648
Alignment:
Q  857 caagcactgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctca 922  Q
    |||||||||||||||| |||||||||||   |||||||||||||||||||||||||||||||||||    
T  8268713 caagcactgtaaacacagtatccaccacatcccatcgtcactactcacccacaaagaacaccctca 8268648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 857 - 922
Target Start/End: Original strand, 8705957 - 8706022
Alignment:
Q  857 caagcactgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctca 922  Q
    |||||||||||||||| ||||||||||| | ||||||||||||| |||||||||||||||||||||    
T  8705957 caagcactgtaaacacagtatccaccactgcccatcgtcactacccacccacaaagaacaccctca 8706022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 702 - 791
Target Start/End: Original strand, 30167219 - 30167310
Alignment:
Q  702 aaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgc--cgcatatagacggtacaccataacca 791  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||| |||     ||||||||||||||| |||||||    
T  30167219 aaatattattaaacgtcatcctcgcaagacgcaaggtatggacgaaacaagatacaaatgatgcaaaaaatatagacggtacactataacca 30167310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 863 - 922
Target Start/End: Complemental strand, 20464852 - 20464793
Alignment:
Q  863 ctgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctca 922  Q
    |||||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||    
T  20464852 ctgtaaacacggtatccaccaccgcccatcgtcactactcacccccaaataacaccctca 20464793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 860 - 922
Target Start/End: Complemental strand, 30964702 - 30964640
Alignment:
Q  860 gcactgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctca 922  Q
    |||||||||| ||| ||| |||||||| ||||| |||||||||||||||||||||||||||||    
T  30964702 gcactgtaaatacgatattcaccaccgcccatcatcactactcacccacaaagaacaccctca 30964640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 702 - 793
Target Start/End: Original strand, 52868767 - 52868859
Alignment:
Q  702 aaatattattaaa-cgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataaccacc 793  Q
    ||||||||||||| || ||||  | ||||||| |||||||| ||||   ||||||||||||||| ||| ||||||||||||||||||||||||    
T  52868767 aaatattattaaaacgtcatcttcacaagacgtaaggtatgaacgaattaagatacaaatggtgtcgcgtatagacggtacaccataaccacc 52868859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 599 - 646
Target Start/End: Complemental strand, 56040773 - 56040726
Alignment:
Q  599 tgatttcgtcgtttaagttcggagttttgttgtttgtcgtcttctgcg 646  Q
    |||||||||||||||||| ||| ||||||||||| |||||||| ||||    
T  56040773 tgatttcgtcgtttaagtgcggcgttttgttgttcgtcgtcttgtgcg 56040726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 861 - 919
Target Start/End: Original strand, 31050478 - 31050536
Alignment:
Q  861 cactgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccc 919  Q
    ||||||||||||   |||||||| | |||||||||||||||||||| ||| ||||||||    
T  31050478 cactgtaaacacaacatccaccatcatccatcgtcactactcacccccaaggaacaccc 31050536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 8e-36; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 702 - 791
Target Start/End: Complemental strand, 34378524 - 34378435
Alignment:
Q  702 aaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataacca 791  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  34378524 aaatattattaaacgccatctccgcaagacgcaaggcatggacgagacgagatacaaatggtgccgcatatagacggtacaccataacca 34378435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 695 - 794
Target Start/End: Complemental strand, 18593674 - 18593575
Alignment:
Q  695 aatcggtaaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataaccacct 794  Q
    |||||| ||||||||||||||| ||||||||||||| ||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||    
T  18593674 aatcggcaaatattattaaacgtcatccccgcaagatgcaaggtatggacgaaacaagataaatatggtgccgcatatagacggtacaccataaccacct 18593575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 695 - 794
Target Start/End: Complemental strand, 7453020 - 7452921
Alignment:
Q  695 aatcggtaaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataaccacct 794  Q
    |||||| ||||||||||||||  |||||  |||||||||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||||    
T  7453020 aatcggcaaatattattaaacatcatccatgcaagacgcaaggtatggacaaatcaagatacaaatggtgccgcatatagacggtacaccataaccacct 7452921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 702 - 794
Target Start/End: Original strand, 5656749 - 5656841
Alignment:
Q  702 aaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataaccacct 794  Q
    |||||||||||||||||||| ||||||||||||||||||| |||| | |||||||||||| ||||||||||||||||||||  ||||||||||    
T  5656749 aaatattattaaacgccatcaccgcaagacgcaaggtatgaacgaaataagatacaaatgatgccgcatatagacggtacatgataaccacct 5656841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 695 - 785
Target Start/End: Original strand, 18313303 - 18313393
Alignment:
Q  695 aatcggtaaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacacca 785  Q
    |||||||||||||||||||||| ||| || | ||||||||||||||||| || ||||||| ||||||||||||||||||||||||||||||    
T  18313303 aatcggtaaatattattaaacgtcattcctgtaagacgcaaggtatggatgaaacaagatgcaaatggtgccgcatatagacggtacacca 18313393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 864 - 922
Target Start/End: Complemental strand, 34378359 - 34378301
Alignment:
Q  864 tgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctca 922  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34378359 tgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctca 34378301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 857 - 940
Target Start/End: Complemental strand, 18593511 - 18593426
Alignment:
Q  857 caagcactgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccct-cagat-aaactcccagacccc 940  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| || || |||||||||||||||    
T  18593511 caagcactgtaaacacggtatccaccaccgcccatcgtcactactcacccacaaagaacatcctccaaataaaactcccagacccc 18593426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 702 - 794
Target Start/End: Complemental strand, 698792 - 698700
Alignment:
Q  702 aaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataaccacct 794  Q
    ||||||||||||||| |||| | |||||||| |||||||||| || | | |||||||||||||||||||||||||||||||| ||||||||||    
T  698792 aaatattattaaacgacatctctgcaagacgtaaggtatggatgaaatatgatacaaatggtgccgcatatagacggtacactataaccacct 698700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 695 - 794
Target Start/End: Original strand, 7161663 - 7161762
Alignment:
Q  695 aatcggtaaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataaccacct 794  Q
    |||||| ||||||||||||||| | ||||| ||||||||||| ||||||||| | ||||||||||| |||  |||||||||||||||||||||| |||||    
T  7161663 aatcggcaaatattattaaacgtcttccccacaagacgcaagatatggacgaaataagatacaaatagtgtagcatatagacggtacaccataatcacct 7161762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 732 - 794
Target Start/End: Complemental strand, 29087873 - 29087811
Alignment:
Q  732 gcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataaccacct 794  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||    
T  29087873 gcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacatcataaccacct 29087811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 695 - 788
Target Start/End: Original strand, 18255099 - 18255192
Alignment:
Q  695 aatcggtaaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataa 788  Q
    |||||| ||||||| |||||||  ||||||| |||| ||| ||||| ||||| ||||||||||||| ||||||||||||||||||||| |||||    
T  18255099 aatcggcaaatattgttaaacgttatccccgtaagatgcagggtatagacgaaacaagatacaaatagtgccgcatatagacggtacatcataa 18255192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 857 - 906
Target Start/End: Complemental strand, 29087747 - 29087698
Alignment:
Q  857 caagcactgtaaacacggtatccaccaccgtccatcgtcactactcaccc 906  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  29087747 caagcactgtaaacacggtattcaccaccgcccatcgtcactactcaccc 29087698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 748 - 792
Target Start/End: Original strand, 41250895 - 41250939
Alignment:
Q  748 acaagatacaaatggtgccgcatatagacggtacaccataaccac 792  Q
    |||||||| ||||||||||||||||||||||||||||||||||||    
T  41250895 acaagatataaatggtgccgcatatagacggtacaccataaccac 41250939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 857 - 940
Target Start/End: Original strand, 7161829 - 7161914
Alignment:
Q  857 caagcactgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctcaga--taaactcccagacccc 940  Q
    ||||||||||||||||| | |||||||||  ||| ||||||||||||||| ||||||||||| ||| |   |||||||||||||||    
T  7161829 caagcactgtaaacacgatttccaccaccacccaacgtcactactcacccccaaagaacaccatcaaaataaaactcccagacccc 7161914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 872 - 921
Target Start/End: Complemental strand, 698614 - 698565
Alignment:
Q  872 cggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctc 921  Q
    |||||||||||| || | ||||||||||||||||||||||||||||||||    
T  698614 cggtatccaccatcgccgatcgtcactactcacccacaaagaacaccctc 698565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 857 - 897
Target Start/End: Complemental strand, 7451641 - 7451601
Alignment:
Q  857 caagcactgtaaacacggtatccaccaccgtccatcgtcac 897  Q
    ||||||||| ||||||||||||||||||| |||||||||||    
T  7451641 caagcactgcaaacacggtatccaccaccttccatcgtcac 7451601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 75; Significance: 5e-34; HSPs: 2)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 696 - 790
Target Start/End: Complemental strand, 19349 - 19255
Alignment:
Q  696 atcggtaaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataacc 790  Q
    ||||| ||||||||||||||| ||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  19349 atcggcaaatattattaaacgtcatcctcgcaagacgcatggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataacc 19255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 862 - 922
Target Start/End: Complemental strand, 19177 - 19120
Alignment:
Q  862 actgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctca 922  Q
    ||||||||||||||||| |||||||  ||||   ||||||||||||||| |||||||||||    
T  19177 actgtaaacacggtatctaccaccgctcatc---actactcacccacaatgaacaccctca 19120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 3e-32; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 695 - 794
Target Start/End: Complemental strand, 3254389 - 3254290
Alignment:
Q  695 aatcggtaaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataaccacct 794  Q
    |||||| ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||  |||||||||| ||||||    
T  3254389 aatcggcaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaacaagatacaaatggtgccgtatatagatagtacaccatagccacct 3254290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 695 - 794
Target Start/End: Complemental strand, 15944431 - 15944332
Alignment:
Q  695 aatcggtaaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataaccacct 794  Q
    |||||| |||||||||||||||||||||| | ||||||||||||||||||   | ||||||||||||||| ||||||||||||||||||||||| |||||    
T  15944431 aatcggcaaatattattaaacgccatccctgtaagacgcaaggtatggacagaagaagatacaaatggtgtcgcatatagacggtacaccataaacacct 15944332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 702 - 794
Target Start/End: Complemental strand, 3117919 - 3117827
Alignment:
Q  702 aaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataaccacct 794  Q
    ||||||||||||||| ||| || |||||||| ||||||||||||| | |||||||||||||||| ||||||||||| ||||||||||||||||    
T  3117919 aaatattattaaacgtcattcctgcaagacgtaaggtatggacgaaataagatacaaatggtgcagcatatagacgctacaccataaccacct 3117827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 695 - 794
Target Start/End: Complemental strand, 10542262 - 10542164
Alignment:
Q  695 aatcggtaaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataaccacct 794  Q
    |||||| |||||||||||| ||||||||| |||||| ||||| |||| |||| |||||||||||| ||||||||||||||||| ||||||||||||||||    
T  10542262 aatcggaaaatattattaagcgccatccc-gcaagatgcaagatatgaacgaaacaagatacaaaaggtgccgcatatagacgatacaccataaccacct 10542164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 738 - 792
Target Start/End: Original strand, 33697789 - 33697843
Alignment:
Q  738 tatggacgagacaagatacaaatggtgccgcatatagacggtacaccataaccac 792  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  33697789 tatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccac 33697843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 702 - 779
Target Start/End: Original strand, 15132496 - 15132573
Alignment:
Q  702 aaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggt 779  Q
    ||||||||||||||||||||  ||||||||| ||||||||||| | |||||||||||||| ||||| |||||||||||    
T  15132496 aaatattattaaacgccatcatcgcaagacgtaaggtatggacaaaacaagatacaaatgatgccgtatatagacggt 15132573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 857 - 921
Target Start/End: Complemental strand, 10542100 - 10542036
Alignment:
Q  857 caagcactgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctc 921  Q
    |||||||| |||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||    
T  10542100 caagcactttaaatacggtatccaccaccgcccatcgtcactactcacccacaaagaataccctc 10542036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 858 - 922
Target Start/End: Complemental strand, 14663344 - 14663280
Alignment:
Q  858 aagcactgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctca 922  Q
    |||||||||||||||  |||||||||||| ||||||||||||||||||| ||||||||| |||||    
T  14663344 aagcactgtaaacacaatatccaccaccgcccatcgtcactactcacccgcaaagaacatcctca 14663280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 857 - 920
Target Start/End: Complemental strand, 3117761 - 3117698
Alignment:
Q  857 caagcactgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccct 920  Q
    |||||||||||||||||||| |||||||||  ||||||| ||||| ||||||||||||||||||    
T  3117761 caagcactgtaaacacggtaaccaccaccgctcatcgtctctacttacccacaaagaacaccct 3117698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 702 - 768
Target Start/End: Complemental strand, 14663478 - 14663414
Alignment:
Q  702 aaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgc 768  Q
    ||||||||||||||| |||||  |||||||| ||||||||||||| |||||||||||||| ||||||    
T  14663478 aaatattattaaacgtcatcct-gcaagacgaaaggtatggacga-acaagatacaaatgctgccgc 14663414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0343 (Bit Score: 69; Significance: 2e-30; HSPs: 2)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 702 - 794
Target Start/End: Complemental strand, 6130 - 6038
Alignment:
Q  702 aaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataaccacct 794  Q
    ||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||| |||| |||||||||||    
T  6130 aaatattattaaacgtcatccccgcaagacgcaagatatgaacgagacaagatacaaatggtgccgtatatagacgttacatcataaccacct 6038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0343; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 857 - 922
Target Start/End: Complemental strand, 5974 - 5909
Alignment:
Q  857 caagcactgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctca 922  Q
    ||||||| ||||||| |||||||||||||  ||||| |||||||||||||||||| ||||||||||    
T  5974 caagcaccgtaaacatggtatccaccacctcccatcatcactactcacccacaaaaaacaccctca 5909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0434 (Bit Score: 65; Significance: 4e-28; HSPs: 1)
Name: scaffold0434
Description:

Target: scaffold0434; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 718 - 794
Target Start/End: Original strand, 2345 - 2421
Alignment:
Q  718 catccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataaccacct 794  Q
    ||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||    
T  2345 catccccacaagacgcaaggtatggacgaaacaagatacagatggtgccgcatatagacggtacaccataaccacct 2421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 65; Significance: 4e-28; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 702 - 794
Target Start/End: Complemental strand, 48760 - 48668
Alignment:
Q  702 aaatattattaaacgccatccccgcaagacgcaaggtatggacgagacaagatacaaatggtgccgcatatagacggtacaccataaccacct 794  Q
    |||||||||| |||| | |||||||||||| |||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||    
T  48760 aaatattattcaacgtcctccccgcaagacacaagatatggactaaacaagatacaaatggtgccgcatatagacggtacaccataaccacct 48668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 695 - 746
Target Start/End: Original strand, 35473 - 35524
Alignment:
Q  695 aatcggtaaatattattaaacgccatccccgcaagacgcaaggtatggacga 746  Q
    |||||| |||||||||| |||| |||||||| |||||| |||||||||||||    
T  35473 aatcggcaaatattattgaacgtcatccccgtaagacgtaaggtatggacga 35524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 857 - 940
Target Start/End: Original strand, 35588 - 35670
Alignment:
Q  857 caagcactgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctcagataaactcccagacccc 940  Q
    |||||||||||||||| ||||||||||| | |||||||||| |||||||  | |||||||| || | | ||||||||| |||||    
T  35588 caagcactgtaaacacagtatccaccactgcccatcgtcac-actcacctgctaagaacactctaaaaaaaactcccacacccc 35670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University