View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0938-Insertion-5 (Length: 668)

Name: NF0938-Insertion-5
Description: NF0938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0938-Insertion-5
NF0938-Insertion-5
[»] chr3 (1 HSPs)
chr3 (8-648)||(45168959-45169603)


Alignment Details
Target: chr3 (Bit Score: 590; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 590; E-Value: 0
Query Start/End: Original strand, 8 - 648
Target Start/End: Original strand, 45168959 - 45169603
Alignment:
Q  8 gttttttgcatcaaagtgtagctccctattggtaaagcattatgttttagtaaccaccgaattatagagaaattcaattttatttatcactacttttgtt 107  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45168959 gttttttgcatcaaagcgtagctccctattggtaaagcattatgttttagtaaccaccgaattatagagaaattcaattttatttatcactacttttgtt 45169058  T
Q  108 gctaatttgtttttcccttctaccatttttatttctagctattgaaataatttggtatgtgaccgagtattttatttgatgtttagaaggagagtggttg 207  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||    
T  45169059 gctaatttgtttttcccttctaccatttttatttctagctagtgaaataatttggtatgtgaccgagtattttattcgatgtttagaaggagagtgattg 45169158  T
Q  208 atataaaattttgtttttcatgtaattgtttgtgtaaagttggtttaaaattaatggagtaacattcagagagtgatagttaaatcggggggaaataaga 307  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||    
T  45169159 atataaaattttgtttttcatgtaattgtttgtgtagagttggtttaaaattaatggagtaacattcagagagtgatagttaaatcgggggcaagtaaga 45169258  T
Q  308 ttaatttgggttatcatgcctccataaagtagatgatcacaaacatagcatagacatggagggaacaactctctgaagtgagatgaaagctccaaccatg 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45169259 ttaatttgggttatcatgcctccataaagtagatgatcacaaacatagcatagacatggagggaacaactctctgaagtgagatgaaagctccaaccatg 45169358  T
Q  408 cagttgtataattcaaagtttgtggaagaagaaaacataagccatggtccatgcatgaatgccatggcttatcccagttgactgtcaatatgtctttttc 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45169359 cagttgtataattcaaagtttgtggaagaagaaaacataagccatggtccatgcatgaatgccatggcttatcccagttgactgtcaatatgtctttttc 45169458  T
Q  508 aatccgtgtgcaaatgcatattatgaattcttactgttaatacgctacactggcaaaattcattattaagttcttctgtaagctaaacaaattgatccgt 607  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45169459 aatccgtgtgcaaatg-atattatgaattcttactgttaatacgctacactggcaaaattcattattaagttcttctgtaagctaaacaaattgatccgt 45169557  T
Q  608 gaaagg-----ttatttgtacacaataattcaccccatggcttgtc 648  Q
    ||||||     |||||||||||||||||||||||||||||||||||    
T  45169558 gaaaggttattttatttgtacacaataattcaccccatggcttgtc 45169603  T

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