View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0938-Insertion-6 (Length: 622)
Name: NF0938-Insertion-6
Description: NF0938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0938-Insertion-6 |
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| [»] chr2 (3 HSPs) |
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| [»] scaffold0028 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 184; Significance: 3e-99; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 411 - 622
Target Start/End: Complemental strand, 23700359 - 23700149
Alignment:
| Q |
411 |
tgattgatgtcttaatcacctttttaagtcctattttaccagcaacaatggctaggcctttggaaaaaataaagaacctcaatggttccaaatctctgtg |
510 |
Q |
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| T |
23700359 |
tgattgatgtcttaatcacatttttaagtcctattttaccagcaacaatggctaggcctttggaaaaaatcaagaacctcaatggttccaaatctctgtg |
23700260 |
T |
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| Q |
511 |
gaaaattgttgttcaagttgttgatttgtggactattactaattcaaagagcaaacaacatattgagatggtgttgtgtgacaaaagaggtagttttgac |
610 |
Q |
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| T |
23700259 |
gaaaattgatgttcgagttgttgatttgtggactgttactaattcaaagagcaaacaacatattgagatggtgttgtgtgac-aaagaggtagttttgac |
23700161 |
T |
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| Q |
611 |
ataacgctacta |
622 |
Q |
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| T |
23700160 |
ataacgctacta |
23700149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 40 - 161
Target Start/End: Complemental strand, 23701290 - 23701170
Alignment:
| Q |
40 |
ttggaaaagattttgaataaagcaaatgtcacttcacttgccgaaaagggttgtacttctgcagagaaatccttttttcaaaatctctatcttgcaaaat |
139 |
Q |
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| T |
23701290 |
ttggaaaaggttttgaataaaccaaatgtcacttcacttggggaaa-gggttgtacttctgcagagaaacccttttttcaaaatctctatcttgcaaact |
23701192 |
T |
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| Q |
140 |
catatcaatacactaccaaaag |
161 |
Q |
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| T |
23701191 |
catatcaatacactaccaaaag |
23701170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 319 - 412
Target Start/End: Complemental strand, 23700993 - 23700900
Alignment:
| Q |
319 |
cctggtaacaattactatacatttcttttgtatattgctgtatttaaatcgttagtttcttctataaaaccacttcaaacgatcatccttcatg |
412 |
Q |
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| T |
23700993 |
cctggtaacaattactatacatttattttgtatattgctgtatttatatcgttagtttcttttataaaaccacttcaaacgatcatccttcatg |
23700900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 88; Significance: 5e-42; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 444 - 595
Target Start/End: Complemental strand, 22080027 - 22079876
Alignment:
| Q |
444 |
ttttaccagcaacaatggctaggcctttggaaaaaataaagaacctcaatggttccaaatctctgtggaaaattgttgttcaagttgttgatttgtggac |
543 |
Q |
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| T |
22080027 |
tttttccagcaacaatggccaggcctttgcaaaagatcaagaacatcaatgatttcaaatctctgtggaaaattgctgttcgagttgttgacatgtggac |
22079928 |
T |
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| Q |
544 |
tattactaattcaaagagcaaacaacatattgagatggtgttgtgtgacaaa |
595 |
Q |
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| || | |||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
22079927 |
tgttgcaaattcaaagaacaaacaacatattgagatggtgttgtgtgacaaa |
22079876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 454 - 595
Target Start/End: Original strand, 1522538 - 1522677
Alignment:
| Q |
454 |
aacaatggctaggcctttggaaaaaataaagaacctcaatggttccaaatctctgtggaaaattgttgttcaagttgttgatttgtggactattactaat |
553 |
Q |
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| T |
1522538 |
aacaatggctaggcctttgcaaaagatcaagaacctcaatgattccaaatccctg--gaaaattgttgttcgagttgttgacatgtggactgttgcaaat |
1522635 |
T |
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| Q |
554 |
tcaaagagcaaacaacatattgagatggtgttgtgtgacaaa |
595 |
Q |
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| T |
1522636 |
tcaaagaagaaacagcatattgagatggtgttgtgtgacaaa |
1522677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028 (Bit Score: 70; Significance: 3e-31; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 450 - 583
Target Start/End: Complemental strand, 125156 - 125023
Alignment:
| Q |
450 |
cagcaacaatggctaggcctttggaaaaaataaagaacctcaatggttccaaatctctgtggaaaattgttgttcaagttgttgatttgtggactattac |
549 |
Q |
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| T |
125156 |
cagcaacaatggctaggcctttccaaaaaattaacagcctcaatgattcaaaatctttgtggaaaattgctgttcgagttgttgatttatggactgttgg |
125057 |
T |
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| Q |
550 |
taattcaaagagcaaacaacatattgagatggtg |
583 |
Q |
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| T |
125056 |
aaattcaaagaacaaacaacatattgagatggtg |
125023 |
T |
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